MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA Brain:7.2 nTPM
GTEx:3.0 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:17.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.6
1870 Female, age 42, unknown 7.7
2019 Male, age 18, unknown 7.5
2411 Female, age 72, unknown 7.2
1833 Male, age 53, unknown 6.8
1827 Male, age 72, unknown 6.6
1830 Male, age 51, unknown 6.4
2586 Male, age 75, left hemisphere 6.4
2219 Male, age 76, both hemispheres 5.9
2666 Male, age 74, left hemisphere 5.8
2828 Female, age 72, unknown 5.5
Dorsal raphe nucleus
nTPM: 7.2
2298 Female, age 72, unknown 7.8
2016 Female, age 72, unknown 7.5
2750 Male, age 76, both hemispheres 7.0
2047 Male, age 72, unknown 6.9
1828 Male, age 53, unknown 6.7
Inferior colliculus
nTPM: 6.9
2097 Female, age 72, unknown 7.5
1848 Female, age 42, unknown 6.9
1890 Male, age 53, unknown 6.8
2849 Male, age 72, unknown 6.2
Median raphe nucleus
nTPM: 6.7
2220 Male, age 76, midline 6.7
Periaquaductal grey, anterior
nTPM: 6.5
2502 Female, age 75, unknown 7.1
1947 Male, age 18, unknown 6.3
1795 Male, age 51, unknown 6.2
Periaquaductal grey, dorsal
nTPM: 7.2
2850 Male, age 76, both hemispheres 7.7
1840 Male, age 53, unknown 7.1
1831 Male, age 72, unknown 7.0
2464 Female, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 7.0
2140 Male, age 76, both hemispheres 7.3
2272 Male, age 74, both hemispheres 6.9
2053 Male, age 18, unknown 6.7
Pretectal area
nTPM: 6.9
2224 Female, age 72, unknown 8.0
2273 Male, age 74, both hemispheres 8.0
2316 Male, age 76, right hemisphere 7.2
2667 Female, age 75, unknown 7.2
1817 Female, age 42, unknown 7.1
2825 Male, age 18, unknown 7.0
1816 Male, age 51, unknown 6.7
1815 Male, age 53, unknown 6.6
2007 Male, age 72, unknown 6.5
1944 Female, age 72, unknown 6.4
2407 Male, age 75, both hemispheres 5.6
Red nucleus
nTPM: 6.7
1821 Female, age 72, unknown 7.7
1954 Female, age 42, unknown 7.6
1865 Male, age 51, unknown 7.4
2725 Female, age 75, unknown 6.9
2227 Male, age 72, unknown 6.8
2785 Male, age 18, unknown 6.8
1904 Male, age 53, unknown 6.6
2503 Female, age 72, unknown 6.6
2769 Male, age 72, unknown 6.6
2823 Male, age 76, right hemisphere 6.5
2588 Male, age 74, left hemisphere 6.1
2584 Male, age 75, left hemisphere 4.9
Substantia nigra
nTPM: 6.9
2409 Female, age 72, unknown 8.8
2241 Male, age 72, unknown 8.3
1941 Male, age 53, unknown 7.6
1889 Female, age 72, unknown 7.2
2699 Male, age 18, unknown 6.7
1916 Female, age 42, unknown 6.4
1851 Male, age 51, unknown 6.3
2665 Male, age 74, both hemispheres 6.1
2583 Male, age 75, right hemisphere 6.0
2590 Female, age 75, unknown 6.0
Superior colliculus
nTPM: 6.7
1895 Male, age 76, right hemisphere 7.5
1839 Male, age 51, unknown 7.1
2664 Male, age 75, both hemispheres 7.0
1995 Male, age 72, unknown 6.9
1796 Male, age 53, unknown 6.6
2087 Female, age 72, unknown 6.6
2668 Female, age 75, unknown 6.6
2587 Male, age 74, left hemisphere 6.5
1913 Female, age 42, unknown 6.3
2261 Male, age 18, unknown 6.3
Ventral tegmental area
nTPM: 6.4
2223 Female, age 72, unknown 6.7
1942 Male, age 51, unknown 6.6
1915 Female, age 42, unknown 6.5
2021 Male, age 53, unknown 6.4
2410 Female, age 72, unknown 6.1
2218 Male, age 76, both hemispheres 6.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.0
Samples: 139

Max nTPM: 5.6
Min nTPM: 1.6
Std nTPM: 0.7
Median nTPM: 2.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 4.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 4.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 4.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 4.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 4.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.7
Sample A Female 4.4
Sample B Female 2.8
Sample C Male 3.1
Sample D Male 2.7
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Female 4.2
Sample B Female 4.2
Sample C Male 3.3
Sample D Male 3.4
Periaqueductal gray
nTPM: 3.5
Samples: 3

Max nTPM: 3.9
Min nTPM: 3.3
Sample B Female 3.3
Sample C Male 3.3
Sample D Male 3.9
Superior colliculi
nTPM: 3.4
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.5
Sample A Female 3.7
Sample B Female 2.5
Sample C Male 4.1
Sample D Male 3.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 17.2
Sample A Male 17.6
Sample B Male 18.2
Sample C Female 18.3
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
378551 Antisense, RP_040625_01_B06, Mouse strain C57BL/6J (56 days, male) 1.1

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