MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:737.8 nTPM
HPA Brain:628.5 nTPM
GTEx:737.8 nTPM
FANTOM5:685.2 Scaled Tags Per Million
Pig:747.6 nTPM
Mouse:738.8 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 628.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 504.6
2586 Male, age 75, left hemisphere 634.6
2411 Female, age 72, unknown 619.8
2828 Female, age 72, unknown 515.9
2019 Male, age 18, unknown 511.6
1827 Male, age 72, unknown 488.3
1833 Male, age 53, unknown 478.9
2219 Male, age 76, both hemispheres 464.6
1870 Female, age 42, unknown 461.6
1830 Male, age 51, unknown 455.7
2666 Male, age 74, left hemisphere 415.2
Dorsal raphe nucleus
nTPM: 476.0
2750 Male, age 76, both hemispheres 537.0
2298 Female, age 72, unknown 532.9
1828 Male, age 53, unknown 454.5
2047 Male, age 72, unknown 433.3
2016 Female, age 72, unknown 422.6
Inferior colliculus
nTPM: 410.5
2097 Female, age 72, unknown 466.3
1890 Male, age 53, unknown 414.5
1848 Female, age 42, unknown 389.3
2849 Male, age 72, unknown 371.9
Median raphe nucleus
nTPM: 497.5
2220 Male, age 76, midline 497.5
Periaquaductal grey, anterior
nTPM: 536.2
2502 Female, age 75, unknown 554.8
1947 Male, age 18, unknown 548.3
1795 Male, age 51, unknown 505.4
Periaquaductal grey, dorsal
nTPM: 395.5
2464 Female, age 72, unknown 427.7
1840 Male, age 53, unknown 418.0
2850 Male, age 76, both hemispheres 372.4
1831 Male, age 72, unknown 363.8
Periaquaductal grey, lateral
nTPM: 386.5
2140 Male, age 76, both hemispheres 403.5
2053 Male, age 18, unknown 389.8
2272 Male, age 74, both hemispheres 366.2
Pretectal area
nTPM: 488.2
1817 Female, age 42, unknown 582.5
2007 Male, age 72, unknown 577.4
1815 Male, age 53, unknown 572.0
1944 Female, age 72, unknown 569.7
1816 Male, age 51, unknown 568.2
2224 Female, age 72, unknown 447.8
2667 Female, age 75, unknown 441.0
2825 Male, age 18, unknown 436.4
2316 Male, age 76, right hemisphere 422.7
2273 Male, age 74, both hemispheres 394.2
2407 Male, age 75, both hemispheres 358.8
Red nucleus
nTPM: 551.2
2503 Female, age 72, unknown 623.5
1821 Female, age 72, unknown 604.0
1904 Male, age 53, unknown 582.9
2227 Male, age 72, unknown 578.9
1865 Male, age 51, unknown 575.6
2725 Female, age 75, unknown 573.6
2769 Male, age 72, unknown 567.8
2785 Male, age 18, unknown 551.7
1954 Female, age 42, unknown 540.1
2588 Male, age 74, left hemisphere 536.9
2823 Male, age 76, right hemisphere 483.6
2584 Male, age 75, left hemisphere 396.2
Substantia nigra
nTPM: 628.5
1851 Male, age 51, unknown 787.7
1916 Female, age 42, unknown 752.6
2665 Male, age 74, both hemispheres 703.1
2241 Male, age 72, unknown 637.0
2699 Male, age 18, unknown 616.5
2409 Female, age 72, unknown 585.3
1941 Male, age 53, unknown 577.2
2583 Male, age 75, right hemisphere 569.1
1889 Female, age 72, unknown 533.1
2590 Female, age 75, unknown 523.8
Superior colliculus
nTPM: 503.7
2668 Female, age 75, unknown 599.0
2087 Female, age 72, unknown 576.1
1796 Male, age 53, unknown 539.8
2261 Male, age 18, unknown 524.4
1913 Female, age 42, unknown 515.3
1995 Male, age 72, unknown 497.5
2664 Male, age 75, both hemispheres 480.6
2587 Male, age 74, left hemisphere 457.0
1839 Male, age 51, unknown 426.9
1895 Male, age 76, right hemisphere 420.1
Ventral tegmental area
nTPM: 582.5
2410 Female, age 72, unknown 702.5
1915 Female, age 42, unknown 661.7
2223 Female, age 72, unknown 606.5
2218 Male, age 76, both hemispheres 560.8
1942 Male, age 51, unknown 501.2
2021 Male, age 53, unknown 462.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 737.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 737.8
Samples: 139

Max nTPM: 1637.1
Min nTPM: 315.5
Std nTPM: 212.3
Median nTPM: 724.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1637.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1399.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1397.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1390.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1155.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1151.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1135.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1134.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1125.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1097.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1084.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 685.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 685.2
FF:10158-103A5 76 years, female 685.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 747.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 747.6
Samples: 4

Max nTPM: 1109.1
Min nTPM: 503.5
Sample A Female 1109.1
Sample B Female 595.1
Sample C Male 782.7
Sample D Male 503.5
Midbrain
nTPM: 661.2
Samples: 4

Max nTPM: 782.2
Min nTPM: 473.8
Sample A Female 782.2
Sample B Female 614.6
Sample C Male 774.2
Sample D Male 473.8
Periaqueductal gray
nTPM: 433.4
Samples: 3

Max nTPM: 480.1
Min nTPM: 401.4
Sample B Female 418.8
Sample C Male 480.1
Sample D Male 401.4
Superior colliculi
nTPM: 723.0
Samples: 4

Max nTPM: 831.8
Min nTPM: 620.1
Sample A Female 831.8
Sample B Female 653.2
Sample C Male 786.8
Sample D Male 620.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 738.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 738.8
Samples: 4

Max nTPM: 855.6
Min nTPM: 644.5
Sample A Male 855.6
Sample B Male 691.5
Sample C Female 644.5
Sample D Female 763.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69873540 Antisense, RP_050512_01_E03, Mouse strain C57BL/6J (56 days, male) 9.4

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