HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:87.8 nTPM
HPA Brain:83.5 nTPM
GTEx:87.8 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:116.0 nTPM
Mouse:169.9 nTPM
Allen mouse:19.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001247
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 83.5
Sample id Sample description nTPM
Hippocampus
nTPM: 77.3
1898 Male, age 80, left hemisphere 103.5
2148 Female, age 91, left hemisphere 76.6
2621 Female, age 67, right hemisphere 73.6
2529 Female, age 94, left hemisphere 72.4
1855 Male, age 76, left hemisphere 72.1
1911 Female, age 85, right hemisphere 65.3
Dentate gyrus
nTPM: 76.2
2530 Female, age 94, left hemisphere 91.2
2528 Male, age 74, both hemispheres 83.8
1927 Female, age 91, both hemispheres 82.0
2010 Male, age 76, both hemispheres 78.5
2246 Female, age 85, both hemispheres 66.0
2531 Female, age 67, both hemispheres 55.7
Entorhinal gyrus
nTPM: 74.0
2764 Male, age 80, right hemisphere 92.1
2117 Female, age 91, right hemisphere 79.1
2613 Female, age 94, left hemisphere 73.1
1938 Female, age 85, left hemisphere 73.0
1787 Male, age 76, left hemisphere 70.7
2686 Male, age 75, right hemisphere 55.8
Hippocampus, CA1
nTPM: 83.5
2749 Male, age 80, left hemisphere 133.7
2527 Male, age 74, both hemispheres 84.3
1873 Female, age 85, both hemispheres 74.4
2045 Male, age 76, both hemispheres 64.6
2082 Female, age 91, right hemisphere 60.4
Hippocampus, CA2
nTPM: 82.7
1963 Male, age 80, left hemisphere 98.0
2249 Male, age 74, both hemispheres 93.7
1892 Male, age 76, both hemispheres 89.9
2437 Female, age 94, left hemisphere 81.7
2113 Female, age 91, right hemisphere 68.1
1940 Female, age 85, left hemisphere 64.7
Hippocampus, CA3
nTPM: 83.1
2436 Male, age 74, both hemispheres 113.6
2137 Male, age 80, left hemisphere 93.6
1867 Male, age 76, both hemispheres 81.6
2620 Female, age 94, left hemisphere 72.4
1891 Female, age 85, both hemispheres 71.9
2861 Female, age 67, both hemispheres 65.4
Parahippocampal cortex
nTPM: 70.4
2250 Female, age 67, right hemisphere 81.7
1990 Female, age 91, right hemisphere 81.1
1850 Male, age 80, both hemispheres 78.1
2245 Female, age 91, both hemispheres 75.5
1933 Female, age 85, both hemispheres 72.6
2532 Female, age 72, left hemisphere 67.9
2692 Male, age 74, both hemispheres 63.7
2018 Male, age 76, both hemispheres 63.2
2693 Female, age 94, both hemispheres 61.1
2622 Female, age 67, right hemisphere 58.6
Perirhinal gyrus
nTPM: 76.7
1847 Female, age 91, left hemisphere 95.2
1794 Male, age 80, right hemisphere 87.3
1841 Female, age 85, right hemisphere 71.1
2521 Female, age 94, right hemisphere 70.2
2848 Male, age 76, right hemisphere 59.6
Subiculum
nTPM: 78.5
2438 Female, age 94, left hemisphere 91.4
1901 Male, age 80, both hemispheres 85.4
1977 Female, age 85, both hemispheres 81.7
2619 Male, age 74, both hemispheres 74.9
2729 Female, age 91, right hemisphere 70.3
2042 Male, age 76, both hemispheres 67.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 87.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 87.8
Samples: 197

Max nTPM: 160.7
Min nTPM: 43.4
Std nTPM: 19.5
Median nTPM: 86.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 160.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 140.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 138.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 132.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 132.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 130.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 127.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 126.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 123.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 121.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 118.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.0
FF:10169-103B7 60 years, female 51.9
FF:10153-102I9 76 years, female 42.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 116.0
Pig sample Sample description nTPM
Subiculum
nTPM: 94.6
Samples: 4

Max nTPM: 123.9
Min nTPM: 82.1
Sample A Female 123.9
Sample B Female 83.0
Sample C Male 89.2
Sample D Male 82.1
Dorsal hippocampus
nTPM: 116.0
Samples: 4

Max nTPM: 153.3
Min nTPM: 84.7
Sample A Female 153.3
Sample B Female 110.0
Sample C Male 115.9
Sample D Male 84.7
Entorhinal cortex
nTPM: 102.9
Samples: 4

Max nTPM: 116.6
Min nTPM: 83.4
Sample A Female 115.0
Sample B Female 116.6
Sample C Male 96.7
Sample D Male 83.4
Ventral hippocampus
nTPM: 114.5
Samples: 4

Max nTPM: 140.1
Min nTPM: 72.6
Sample A Female 132.4
Sample B Female 72.6
Sample C Male 140.1
Sample D Male 112.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 169.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 163.1
Samples: 4

Max nTPM: 177.1
Min nTPM: 152.1
Sample A Male 152.1
Sample B Male 161.0
Sample C Female 177.1
Sample D Female 162.1
Hippocampal formation
nTPM: 170.0
Samples: 4

Max nTPM: 185.9
Min nTPM: 152.0
Sample A Male 185.9
Sample B Male 152.0
Sample C Female 163.1
Sample D Female 178.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.6
323186 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 19.6
357103 Antisense, RP_040617_02_B10, Mouse strain C57BL/6J (56 days, male) 15.6

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