HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:17.1 nTPM
GTEx:26.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:10.6 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.4
1911 Female, age 85, right hemisphere 16.1
1898 Male, age 80, left hemisphere 13.8
2529 Female, age 94, left hemisphere 13.5
2621 Female, age 67, right hemisphere 11.1
1855 Male, age 76, left hemisphere 11.0
2148 Female, age 91, left hemisphere 8.8
Dentate gyrus
nTPM: 11.2
2530 Female, age 94, left hemisphere 17.8
2010 Male, age 76, both hemispheres 14.1
2528 Male, age 74, both hemispheres 12.9
2246 Female, age 85, both hemispheres 8.2
2531 Female, age 67, both hemispheres 7.2
1927 Female, age 91, both hemispheres 7.0
Entorhinal gyrus
nTPM: 14.7
2117 Female, age 91, right hemisphere 27.0
2764 Male, age 80, right hemisphere 20.3
1938 Female, age 85, left hemisphere 13.3
2613 Female, age 94, left hemisphere 11.2
2686 Male, age 75, right hemisphere 8.6
1787 Male, age 76, left hemisphere 8.0
Hippocampus, CA1
nTPM: 9.5
1873 Female, age 85, both hemispheres 11.7
2749 Male, age 80, left hemisphere 11.0
2082 Female, age 91, right hemisphere 10.6
2527 Male, age 74, both hemispheres 9.5
2045 Male, age 76, both hemispheres 4.4
Hippocampus, CA2
nTPM: 12.5
1963 Male, age 80, left hemisphere 19.8
2249 Male, age 74, both hemispheres 14.7
2437 Female, age 94, left hemisphere 12.3
2113 Female, age 91, right hemisphere 12.2
1940 Female, age 85, left hemisphere 10.1
1892 Male, age 76, both hemispheres 5.9
Hippocampus, CA3
nTPM: 7.8
1891 Female, age 85, both hemispheres 17.7
1867 Male, age 76, both hemispheres 10.8
2436 Male, age 74, both hemispheres 7.2
2137 Male, age 80, left hemisphere 4.8
2620 Female, age 94, left hemisphere 3.6
2861 Female, age 67, both hemispheres 2.5
Parahippocampal cortex
nTPM: 9.1
1990 Female, age 91, right hemisphere 14.3
2692 Male, age 74, both hemispheres 13.5
2532 Female, age 72, left hemisphere 12.8
1850 Male, age 80, both hemispheres 10.6
1933 Female, age 85, both hemispheres 10.1
2018 Male, age 76, both hemispheres 8.7
2245 Female, age 91, both hemispheres 7.9
2693 Female, age 94, both hemispheres 5.7
2250 Female, age 67, right hemisphere 4.5
2622 Female, age 67, right hemisphere 2.6
Perirhinal gyrus
nTPM: 5.7
1794 Male, age 80, right hemisphere 6.7
1847 Female, age 91, left hemisphere 6.0
2848 Male, age 76, right hemisphere 6.0
2521 Female, age 94, right hemisphere 5.7
1841 Female, age 85, right hemisphere 3.9
Subiculum
nTPM: 17.1
2042 Male, age 76, both hemispheres 28.4
1901 Male, age 80, both hemispheres 20.7
1977 Female, age 85, both hemispheres 17.5
2619 Male, age 74, both hemispheres 12.6
2729 Female, age 91, right hemisphere 11.7
2438 Female, age 94, left hemisphere 11.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.3
Samples: 197

Max nTPM: 100.9
Min nTPM: 0.7
Std nTPM: 18.0
Median nTPM: 23.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 85.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 83.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 82.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 78.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 67.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 66.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 65.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 63.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 58.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 58.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 0.0
FF:10153-102I9 76 years, female 0.1
FF:10169-103B7 60 years, female 0.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Subiculum
nTPM: 7.6
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.4
Sample A Female 7.8
Sample B Female 9.7
Sample C Male 6.4
Sample D Male 6.6
Dorsal hippocampus
nTPM: 25.6
Samples: 4

Max nTPM: 39.5
Min nTPM: 6.7
Sample A Female 37.7
Sample B Female 18.4
Sample C Male 39.5
Sample D Male 6.7
Entorhinal cortex
nTPM: 7.1
Samples: 4

Max nTPM: 10.6
Min nTPM: 4.9
Sample A Female 5.5
Sample B Female 10.6
Sample C Male 4.9
Sample D Male 7.4
Ventral hippocampus
nTPM: 14.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 6.9
Sample A Female 16.9
Sample B Female 6.9
Sample C Male 15.1
Sample D Male 19.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 2.7
Sample A Male 11.5
Sample B Male 8.7
Sample C Female 6.6
Sample D Female 2.7
Hippocampal formation
nTPM: 10.6
Samples: 4

Max nTPM: 15.2
Min nTPM: 8.0
Sample A Male 8.0
Sample B Male 8.9
Sample C Female 15.2
Sample D Female 10.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68545977 Antisense, RP_050120_01_H02, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org