HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.9 nTPM
HPA Brain:108.1 nTPM
GTEx:66.9 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:12.0 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 108.1
Sample id Sample description nTPM
Hippocampus
nTPM: 80.7
2529 Female, age 94, left hemisphere 99.0
1911 Female, age 85, right hemisphere 92.8
1898 Male, age 80, left hemisphere 81.4
2621 Female, age 67, right hemisphere 76.4
1855 Male, age 76, left hemisphere 68.8
2148 Female, age 91, left hemisphere 65.8
Dentate gyrus
nTPM: 76.7
2530 Female, age 94, left hemisphere 124.8
2528 Male, age 74, both hemispheres 87.4
2010 Male, age 76, both hemispheres 79.1
2246 Female, age 85, both hemispheres 61.4
2531 Female, age 67, both hemispheres 54.9
1927 Female, age 91, both hemispheres 52.5
Entorhinal gyrus
nTPM: 91.2
2117 Female, age 91, right hemisphere 162.5
2764 Male, age 80, right hemisphere 112.4
2613 Female, age 94, left hemisphere 70.2
1787 Male, age 76, left hemisphere 70.0
1938 Female, age 85, left hemisphere 69.7
2686 Male, age 75, right hemisphere 62.3
Hippocampus, CA1
nTPM: 56.4
2527 Male, age 74, both hemispheres 75.0
1873 Female, age 85, both hemispheres 66.8
2082 Female, age 91, right hemisphere 56.4
2749 Male, age 80, left hemisphere 49.2
2045 Male, age 76, both hemispheres 34.8
Hippocampus, CA2
nTPM: 82.4
1963 Male, age 80, left hemisphere 109.5
2249 Male, age 74, both hemispheres 108.9
2437 Female, age 94, left hemisphere 80.6
1940 Female, age 85, left hemisphere 78.1
2113 Female, age 91, right hemisphere 70.5
1892 Male, age 76, both hemispheres 46.6
Hippocampus, CA3
nTPM: 60.4
1891 Female, age 85, both hemispheres 100.5
1867 Male, age 76, both hemispheres 77.0
2436 Male, age 74, both hemispheres 60.2
2861 Female, age 67, both hemispheres 48.8
2137 Male, age 80, left hemisphere 39.0
2620 Female, age 94, left hemisphere 36.9
Parahippocampal cortex
nTPM: 66.7
1990 Female, age 91, right hemisphere 88.1
2532 Female, age 72, left hemisphere 85.0
2692 Male, age 74, both hemispheres 84.6
2018 Male, age 76, both hemispheres 71.8
2245 Female, age 91, both hemispheres 67.4
1933 Female, age 85, both hemispheres 67.3
1850 Male, age 80, both hemispheres 61.9
2250 Female, age 67, right hemisphere 47.6
2622 Female, age 67, right hemisphere 47.2
2693 Female, age 94, both hemispheres 45.5
Perirhinal gyrus
nTPM: 48.5
1794 Male, age 80, right hemisphere 57.4
2521 Female, age 94, right hemisphere 53.8
1841 Female, age 85, right hemisphere 45.3
1847 Female, age 91, left hemisphere 45.1
2848 Male, age 76, right hemisphere 40.8
Subiculum
nTPM: 108.1
2042 Male, age 76, both hemispheres 148.0
1901 Male, age 80, both hemispheres 120.6
1977 Female, age 85, both hemispheres 102.1
2438 Female, age 94, left hemisphere 98.6
2619 Male, age 74, both hemispheres 96.6
2729 Female, age 91, right hemisphere 82.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.9
Samples: 197

Max nTPM: 260.2
Min nTPM: 12.8
Std nTPM: 37.2
Median nTPM: 61.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 260.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 219.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 174.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 165.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 161.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 161.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 156.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 154.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 150.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 147.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 146.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 43.6
FF:10153-102I9 76 years, female 52.9
FF:10169-103B7 60 years, female 34.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Subiculum
nTPM: 16.2
Samples: 4

Max nTPM: 21.9
Min nTPM: 13.6
Sample A Female 21.9
Sample B Female 15.3
Sample C Male 13.9
Sample D Male 13.6
Dorsal hippocampus
nTPM: 23.9
Samples: 4

Max nTPM: 35.8
Min nTPM: 11.8
Sample A Female 35.8
Sample B Female 18.0
Sample C Male 30.0
Sample D Male 11.8
Entorhinal cortex
nTPM: 18.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.4
Sample A Female 17.5
Sample B Female 18.1
Sample C Male 19.3
Sample D Male 17.4
Ventral hippocampus
nTPM: 18.6
Samples: 4

Max nTPM: 21.5
Min nTPM: 11.5
Sample A Female 21.5
Sample B Female 11.5
Sample C Male 20.1
Sample D Male 21.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.0
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.3
Sample A Male 13.5
Sample B Male 13.3
Sample C Female 10.3
Sample D Female 10.7
Hippocampal formation
nTPM: 9.9
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.8
Sample A Male 10.3
Sample B Male 9.7
Sample C Female 8.8
Sample D Female 10.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
67792190 Antisense, RP_040920_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3
72007936 Antisense, RP_051017_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2

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