MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.4 nTPM
HPA Brain:69.7 nTPM
GTEx:60.4 nTPM
FANTOM5:75.2 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:54.2 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.9
2586 Male, age 75, left hemisphere 92.7
2828 Female, age 72, unknown 71.6
2666 Male, age 74, left hemisphere 68.4
1830 Male, age 51, unknown 65.5
1833 Male, age 53, unknown 64.6
1870 Female, age 42, unknown 64.4
2019 Male, age 18, unknown 64.2
1827 Male, age 72, unknown 63.5
2411 Female, age 72, unknown 61.9
2219 Male, age 76, both hemispheres 61.7
Dorsal raphe nucleus
nTPM: 58.0
1828 Male, age 53, unknown 61.2
2750 Male, age 76, both hemispheres 59.0
2016 Female, age 72, unknown 57.9
2298 Female, age 72, unknown 56.6
2047 Male, age 72, unknown 55.5
Inferior colliculus
nTPM: 60.2
2849 Male, age 72, unknown 68.7
1848 Female, age 42, unknown 61.6
1890 Male, age 53, unknown 56.4
2097 Female, age 72, unknown 54.0
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Periaquaductal grey, anterior
nTPM: 63.9
2502 Female, age 75, unknown 67.4
1795 Male, age 51, unknown 63.6
1947 Male, age 18, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 57.5
2850 Male, age 76, both hemispheres 60.8
1840 Male, age 53, unknown 57.9
2464 Female, age 72, unknown 56.3
1831 Male, age 72, unknown 55.1
Periaquaductal grey, lateral
nTPM: 57.3
2140 Male, age 76, both hemispheres 63.9
2053 Male, age 18, unknown 58.0
2272 Male, age 74, both hemispheres 50.1
Pretectal area
nTPM: 61.4
2007 Male, age 72, unknown 68.5
1817 Female, age 42, unknown 67.7
2407 Male, age 75, both hemispheres 66.1
1815 Male, age 53, unknown 64.6
2316 Male, age 76, right hemisphere 62.2
1816 Male, age 51, unknown 61.8
2825 Male, age 18, unknown 61.8
1944 Female, age 72, unknown 58.1
2667 Female, age 75, unknown 57.6
2273 Male, age 74, both hemispheres 53.9
2224 Female, age 72, unknown 52.9
Red nucleus
nTPM: 69.7
2769 Male, age 72, unknown 75.8
2785 Male, age 18, unknown 75.3
2503 Female, age 72, unknown 74.5
2227 Male, age 72, unknown 74.1
2584 Male, age 75, left hemisphere 72.6
1865 Male, age 51, unknown 71.1
1904 Male, age 53, unknown 70.3
1821 Female, age 72, unknown 68.9
1954 Female, age 42, unknown 67.6
2588 Male, age 74, left hemisphere 66.3
2823 Male, age 76, right hemisphere 60.3
2725 Female, age 75, unknown 59.7
Substantia nigra
nTPM: 63.6
2583 Male, age 75, right hemisphere 75.5
2665 Male, age 74, both hemispheres 74.0
2590 Female, age 75, unknown 67.5
2699 Male, age 18, unknown 66.2
1851 Male, age 51, unknown 65.7
1916 Female, age 42, unknown 62.2
1941 Male, age 53, unknown 61.9
1889 Female, age 72, unknown 61.2
2409 Female, age 72, unknown 55.3
2241 Male, age 72, unknown 46.2
Superior colliculus
nTPM: 66.3
2664 Male, age 75, both hemispheres 82.8
2668 Female, age 75, unknown 72.0
1913 Female, age 42, unknown 69.7
1995 Male, age 72, unknown 69.6
1796 Male, age 53, unknown 67.5
1839 Male, age 51, unknown 65.7
2261 Male, age 18, unknown 62.2
2587 Male, age 74, left hemisphere 60.5
2087 Female, age 72, unknown 57.4
1895 Male, age 76, right hemisphere 55.3
Ventral tegmental area
nTPM: 61.1
2410 Female, age 72, unknown 66.2
2223 Female, age 72, unknown 65.3
1915 Female, age 42, unknown 61.5
2021 Male, age 53, unknown 59.3
1942 Male, age 51, unknown 58.7
2218 Male, age 76, both hemispheres 56.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.4
Samples: 139

Max nTPM: 96.9
Min nTPM: 29.8
Std nTPM: 11.7
Median nTPM: 59.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 96.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 95.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 85.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 85.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 82.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 81.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 79.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 79.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.2
FF:10158-103A5 76 years, female 75.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.8
Sample A Female 54.3
Sample B Female 51.0
Sample C Male 44.8
Sample D Male 50.6
Midbrain
nTPM: 51.4
Samples: 4

Max nTPM: 68.2
Min nTPM: 42.1
Sample A Female 68.2
Sample B Female 47.4
Sample C Male 47.7
Sample D Male 42.1
Periaqueductal gray
nTPM: 44.4
Samples: 3

Max nTPM: 47.8
Min nTPM: 42.7
Sample B Female 42.7
Sample C Male 47.8
Sample D Male 42.7
Superior colliculi
nTPM: 52.5
Samples: 4

Max nTPM: 56.7
Min nTPM: 48.1
Sample A Female 56.7
Sample B Female 56.1
Sample C Male 48.9
Sample D Male 48.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 56.9
Min nTPM: 50.8
Sample A Male 56.9
Sample B Male 50.8
Sample C Female 54.1
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69080508 Antisense, RP_050324_02_B09, Mouse strain C57BL/6J (56 days, male) 6.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org