MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:21.7 nTPM
GTEx:15.3 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:8.1 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2666 Male, age 74, left hemisphere 26.0
2019 Male, age 18, unknown 22.0
2828 Female, age 72, unknown 19.3
1830 Male, age 51, unknown 17.5
1833 Male, age 53, unknown 16.9
1870 Female, age 42, unknown 16.7
2411 Female, age 72, unknown 15.8
1827 Male, age 72, unknown 12.0
2586 Male, age 75, left hemisphere 11.0
2219 Male, age 76, both hemispheres 10.5
Dorsal raphe nucleus
nTPM: 15.0
2750 Male, age 76, both hemispheres 19.6
1828 Male, age 53, unknown 17.7
2047 Male, age 72, unknown 13.9
2016 Female, age 72, unknown 12.5
2298 Female, age 72, unknown 11.5
Inferior colliculus
nTPM: 15.1
1890 Male, age 53, unknown 19.0
1848 Female, age 42, unknown 14.7
2097 Female, age 72, unknown 13.9
2849 Male, age 72, unknown 12.6
Median raphe nucleus
nTPM: 13.5
2220 Male, age 76, midline 13.5
Periaquaductal grey, anterior
nTPM: 13.7
2502 Female, age 75, unknown 16.2
1947 Male, age 18, unknown 14.5
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 11.2
2464 Female, age 72, unknown 13.9
1831 Male, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 9.3
1840 Male, age 53, unknown 8.1
Periaquaductal grey, lateral
nTPM: 11.6
2053 Male, age 18, unknown 13.4
2272 Male, age 74, both hemispheres 10.9
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 13.0
1817 Female, age 42, unknown 19.2
2007 Male, age 72, unknown 16.5
1944 Female, age 72, unknown 15.6
1815 Male, age 53, unknown 15.2
2316 Male, age 76, right hemisphere 14.1
1816 Male, age 51, unknown 13.7
2667 Female, age 75, unknown 11.9
2224 Female, age 72, unknown 11.0
2825 Male, age 18, unknown 10.9
2407 Male, age 75, both hemispheres 7.5
2273 Male, age 74, both hemispheres 6.9
Red nucleus
nTPM: 21.7
2588 Male, age 74, left hemisphere 26.8
2823 Male, age 76, right hemisphere 26.4
1954 Female, age 42, unknown 25.5
2769 Male, age 72, unknown 23.1
1904 Male, age 53, unknown 23.0
1821 Female, age 72, unknown 22.6
2227 Male, age 72, unknown 22.2
1865 Male, age 51, unknown 21.3
2785 Male, age 18, unknown 18.7
2503 Female, age 72, unknown 18.5
2725 Female, age 75, unknown 16.9
2584 Male, age 75, left hemisphere 15.4
Substantia nigra
nTPM: 16.8
2665 Male, age 74, both hemispheres 31.7
2409 Female, age 72, unknown 18.4
1851 Male, age 51, unknown 17.9
1916 Female, age 42, unknown 16.3
2241 Male, age 72, unknown 16.1
1889 Female, age 72, unknown 15.5
2590 Female, age 75, unknown 15.3
2699 Male, age 18, unknown 13.4
1941 Male, age 53, unknown 11.8
2583 Male, age 75, right hemisphere 11.3
Superior colliculus
nTPM: 13.5
2587 Male, age 74, left hemisphere 17.5
1895 Male, age 76, right hemisphere 17.1
2087 Female, age 72, unknown 16.5
2668 Female, age 75, unknown 15.3
1839 Male, age 51, unknown 12.7
1796 Male, age 53, unknown 12.6
1995 Male, age 72, unknown 12.2
2261 Male, age 18, unknown 12.2
1913 Female, age 42, unknown 11.8
2664 Male, age 75, both hemispheres 7.1
Ventral tegmental area
nTPM: 15.0
2218 Male, age 76, both hemispheres 17.7
2410 Female, age 72, unknown 15.3
1942 Male, age 51, unknown 15.1
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 14.0
2021 Male, age 53, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
8.912.017.93.030.6010203040506070
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 72.7
Min nTPM: 3.0
Std nTPM: 10.3
Median nTPM: 12.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 50.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 44.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 43.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 38.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 37.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 35.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 34.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
12.314.821.711.235.805101520253035
 		Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 35.8
Min nTPM: 11.2
Sample A Female 12.6
Sample B Female 35.8
Sample C Male 11.2
Sample D Male 17.0
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.9
Sample A Female 14.4
Sample B Female 11.9
Sample C Male 13.0
Sample D Male 11.9
5.86.16.55.56.90.00.51.01.52.02.53.03.54.04.55.05.56.06.5
 		Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 6.9
Min nTPM: 5.5
Sample B Female 6.9
Sample C Male 6.1
Sample D Male 5.5
16.322.132.713.250.505101520253035404550
 		Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 50.5
Min nTPM: 13.2
Sample A Female 26.8
Sample B Female 50.5
Sample C Male 13.2
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.5
Sample A Male 8.0
Sample B Male 7.5
Sample C Female 8.3
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
77931975 Antisense, RP_070219_02_C05, Mouse strain C57BL/6J (56 days, male) 1.0

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