HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		188.377
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:32.9 nTPM
GTEx:9.1 nTPM
FANTOM5:22.1 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:18.3 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044465
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA044465
Hippocampal formation mean intensity 188.377
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 108.810
Molecular layer of the dentate gyrus 63.692
Granular dentate gyrus 188.377
CA1 - oriens layer 44.514
CA1 - pyramidal layer 104.554
CA1 - radiatum layer 53.638
CA2 - oriens layer 49.519
CA2 - pyramidal layer 74.653
CA2 - radiatum layer 45.267
CA3 - oriens layer 58.836
CA3 - pyramidal layer 132.462
CA3 - radiatum layer 52.851
Stratum lucidum 59.653
Lacunosum moleculare 57.119
Subiculum 25.217

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Hippocampus
nTPM: 30.4
2148 Female, age 91, left hemisphere 35.9
1855 Male, age 76, left hemisphere 34.3
1898 Male, age 80, left hemisphere 30.3
2621 Female, age 67, right hemisphere 29.9
2529 Female, age 94, left hemisphere 28.7
1911 Female, age 85, right hemisphere 23.4
Dentate gyrus
nTPM: 32.0
2531 Female, age 67, both hemispheres 34.6
1927 Female, age 91, both hemispheres 34.0
2528 Male, age 74, both hemispheres 33.7
2010 Male, age 76, both hemispheres 31.1
2530 Female, age 94, left hemisphere 30.9
2246 Female, age 85, both hemispheres 27.7
Entorhinal gyrus
nTPM: 28.9
2764 Male, age 80, right hemisphere 33.9
2613 Female, age 94, left hemisphere 33.3
1787 Male, age 76, left hemisphere 30.0
2686 Male, age 75, right hemisphere 28.6
1938 Female, age 85, left hemisphere 24.5
2117 Female, age 91, right hemisphere 23.3
Hippocampus, CA1
nTPM: 32.9
2045 Male, age 76, both hemispheres 36.5
2749 Male, age 80, left hemisphere 35.0
2082 Female, age 91, right hemisphere 34.2
1873 Female, age 85, both hemispheres 29.8
2527 Male, age 74, both hemispheres 28.7
Hippocampus, CA2
nTPM: 29.2
1963 Male, age 80, left hemisphere 34.8
2437 Female, age 94, left hemisphere 32.8
1892 Male, age 76, both hemispheres 28.9
2113 Female, age 91, right hemisphere 27.3
2249 Male, age 74, both hemispheres 26.5
1940 Female, age 85, left hemisphere 24.9
Hippocampus, CA3
nTPM: 30.3
2861 Female, age 67, both hemispheres 35.8
2436 Male, age 74, both hemispheres 35.1
2620 Female, age 94, left hemisphere 33.9
2137 Male, age 80, left hemisphere 29.1
1867 Male, age 76, both hemispheres 26.7
1891 Female, age 85, both hemispheres 21.4
Parahippocampal cortex
nTPM: 28.6
2622 Female, age 67, right hemisphere 34.3
2693 Female, age 94, both hemispheres 32.4
2245 Female, age 91, both hemispheres 32.0
2250 Female, age 67, right hemisphere 30.9
2018 Male, age 76, both hemispheres 28.6
1990 Female, age 91, right hemisphere 28.4
2532 Female, age 72, left hemisphere 27.0
1933 Female, age 85, both hemispheres 26.6
2692 Male, age 74, both hemispheres 22.9
1850 Male, age 80, both hemispheres 22.8
Perirhinal gyrus
nTPM: 30.2
2521 Female, age 94, right hemisphere 41.2
1847 Female, age 91, left hemisphere 30.2
1794 Male, age 80, right hemisphere 29.2
1841 Female, age 85, right hemisphere 25.9
2848 Male, age 76, right hemisphere 24.7
Subiculum
nTPM: 25.3
2729 Female, age 91, right hemisphere 31.8
2619 Male, age 74, both hemispheres 28.5
1977 Female, age 85, both hemispheres 28.3
1901 Male, age 80, both hemispheres 21.5
2438 Female, age 94, left hemisphere 21.1
2042 Male, age 76, both hemispheres 20.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.1
Samples: 197

Max nTPM: 32.2
Min nTPM: 3.0
Std nTPM: 3.6
Median nTPM: 8.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 32.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 19.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 17.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 17.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 16.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 15.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 14.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 14.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 14.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 14.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 14.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.1
FF:10169-103B7 60 years, female 22.8
FF:10153-102I9 76 years, female 21.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Subiculum
nTPM: 19.9
Samples: 4

Max nTPM: 24.8
Min nTPM: 16.0
Sample A Female 24.8
Sample B Female 17.9
Sample C Male 20.8
Sample D Male 16.0
Dorsal hippocampus
nTPM: 14.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 9.1
Sample A Female 16.6
Sample B Female 15.6
Sample C Male 14.7
Sample D Male 9.1
Entorhinal cortex
nTPM: 17.4
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.3
Sample A Female 16.3
Sample B Female 16.6
Sample C Male 19.8
Sample D Male 16.8
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 25.3
Min nTPM: 13.4
Sample A Female 16.8
Sample B Female 13.9
Sample C Male 25.3
Sample D Male 13.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.1
Sample A Male 19.9
Sample B Male 18.9
Sample C Female 16.1
Sample D Female 18.3
Hippocampal formation
nTPM: 16.1
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 15.3
Sample C Female 16.9
Sample D Female 17.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
69608911 Antisense, RP_050426_04_E01, Mouse strain C57BL/6J (56 days, male) 2.8
73992940 Antisense, RP_051214_03_D04, Mouse strain C57BL/6J (56 days, male) 2.5

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