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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.1
nTPM
Monaco:
64.4
nTPM
Schmiedel:
66.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
25.1
HPA sample
nTPM
gdT-cell nTPM: 14.8
Samples: 6
Max nTPM: 38.5
Min nTPM: 4.2
P10809_1007
38.5
P10809_1022
8.6
P10809_1041
14.8
P10809_1060
4.2
P10809_1077
11.8
P10809_1098
11.0
MAIT T-cell nTPM: 22.3
Samples: 6
Max nTPM: 42.8
Min nTPM: 7.0
P10809_1006
42.8
P10809_1024
12.9
P10809_1043
26.0
P10809_1062
7.0
P10809_1083
16.7
P10809_1097
28.1
Memory CD4 T-cell nTPM: 21.0
Samples: 6
Max nTPM: 42.6
Min nTPM: 4.6
P10809_1014
42.6
P10809_1026
20.7
P10809_1045
28.6
P10809_1064
22.3
P10809_1086
7.1
P10809_1113
4.6
Memory CD8 T-cell nTPM: 21.4
Samples: 5
Max nTPM: 40.1
Min nTPM: 8.7
P10809_1012
40.1
P10809_1027
8.7
P10809_1046
30.7
P10809_1065
11.5
P10809_1111
15.9
Naive CD4 T-cell nTPM: 25.1
Samples: 6
Max nTPM: 52.2
Min nTPM: 11.0
P10809_1015
42.4
P10809_1030
17.9
P10809_1049
52.2
P10809_1068
12.7
P10809_1085
11.0
P10809_1112
14.2
Naive CD8 T-cell nTPM: 17.3
Samples: 6
Max nTPM: 24.5
Min nTPM: 4.9
P10809_1016
24.5
P10809_1031
18.0
P10809_1050
23.6
P10809_1069
14.5
P10809_1087
4.9
P10809_1110
18.2
T-reg nTPM: 22.9
Samples: 6
Max nTPM: 56.6
Min nTPM: 4.5
P10809_1018
20.7
P10809_1037
26.4
P10809_1056
56.6
P10809_1075
12.4
P10809_1094
4.5
P10809_1106
16.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
64.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 39.5
Samples: 4
Max nTPM: 80.7
Min nTPM: 6.2
RHH5202_R3573
6.2
RHH5230_R3602
80.7
RHH5259_R3631
60.5
RHH5288_R3660
10.6
Effector memory CD8 T-cell nTPM: 42.9
Samples: 4
Max nTPM: 92.6
Min nTPM: 8.2
RHH5203_R3574
23.3
RHH5231_R3603
47.6
RHH5260_R3632
92.6
RHH5289_R3661
8.2
MAIT T-cell nTPM: 33.9
Samples: 4
Max nTPM: 76.3
Min nTPM: 13.4
RHH5233_R3605
13.4
RHH5205_R3576
26.1
RHH5262_R3634
76.3
RHH5297_R3663
19.6
Memory CD4 T-cell TFH nTPM: 29.7
Samples: 4
Max nTPM: 56.8
Min nTPM: 4.5
RHH5300_R3666
34.0
RHH5236_R3608
56.8
RHH5265_R3637
23.4
RHH5208_R3579
4.5
Memory CD4 T-cell Th1 nTPM: 41.9
Samples: 4
Max nTPM: 83.8
Min nTPM: 12.7
RHH5210_R3581
16.2
RHH5302_R3668
12.7
RHH5238_R3610
55.0
RHH5267_R3639
83.8
Memory CD4 T-cell Th1/Th17 nTPM: 37.3
Samples: 4
Max nTPM: 74.8
Min nTPM: 11.4
RHH5303_R3669
11.4
RHH5211_R3582
41.2
RHH5239_R3611
21.7
RHH5268_R3640
74.8
Memory CD4 T-cell Th17 nTPM: 41.5
Samples: 4
Max nTPM: 80.6
Min nTPM: 11.7
RHH5304_R3670
12.8
RHH5212_R3583
61.0
RHH5240_R3612
11.7
RHH5269_R3641
80.6
Memory CD4 T-cell Th2 nTPM: 42.1
Samples: 4
Max nTPM: 84.5
Min nTPM: 16.1
RHH5305_R3671
24.8
RHH5213_R3584
43.1
RHH5241_R3613
16.1
RHH5270_R3642
84.5
Naive CD4 T-cell nTPM: 49.4
Samples: 4
Max nTPM: 72.6
Min nTPM: 23.6
RHH5306_R3672
42.7
RHH5214_R3585
72.6
RHH5242_R3614
23.6
RHH5271_R3643
58.8
Naive CD8 T-cell nTPM: 25.9
Samples: 4
Max nTPM: 34.2
Min nTPM: 11.1
RHH5201_R3572
11.1
RHH5229_R3601
34.2
RHH5258_R3630
29.3
RHH5287_R3659
29.0
Non-Vd2 gdTCR nTPM: 35.3
Samples: 4
Max nTPM: 61.7
Min nTPM: 18.5
RHH5235_R3607
61.7
RHH5264_R3636
23.8
RHH5207_R3578
18.5
RHH5299_R3665
37.2
T-reg nTPM: 64.4
Samples: 4
Max nTPM: 104.5
Min nTPM: 33.9
RHH5301_R3667
33.9
RHH5237_R3609
71.2
RHH5266_R3638
104.5
RHH5209_R3580
47.9
Terminal effector memory CD4 T-cell nTPM: 37.9
Samples: 2
Max nTPM: 49.7
Min nTPM: 26.0
RHH5243_R3615
49.7
RHH5272_R3644
26.0
Terminal effector memory CD8 T-cell nTPM: 40.1
Samples: 4
Max nTPM: 90.7
Min nTPM: 15.4
RHH5232_R3604
33.3
RHH5204_R3575
20.9
RHH5261_R3633
90.7
RHH5296_R3662
15.4
Vd2 gdTCR nTPM: 37.6
Samples: 4
Max nTPM: 48.9
Min nTPM: 20.5
RHH5234_R3606
34.5
RHH5206_R3577
20.5
RHH5263_R3635
48.9
RHH5298_R3664
46.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
