MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA Brain:25.1 nTPM
GTEx:15.0 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:9.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
2586 Male, age 75, left hemisphere 34.7
2666 Male, age 74, left hemisphere 31.9
2828 Female, age 72, unknown 25.6
1830 Male, age 51, unknown 22.4
1827 Male, age 72, unknown 22.1
2019 Male, age 18, unknown 21.8
1833 Male, age 53, unknown 21.2
1870 Female, age 42, unknown 20.3
2219 Male, age 76, both hemispheres 19.0
2411 Female, age 72, unknown 18.4
Dorsal raphe nucleus
nTPM: 18.5
1828 Male, age 53, unknown 20.3
2016 Female, age 72, unknown 19.3
2750 Male, age 76, both hemispheres 19.0
2298 Female, age 72, unknown 17.4
2047 Male, age 72, unknown 16.7
Inferior colliculus
nTPM: 22.0
2849 Male, age 72, unknown 23.3
1890 Male, age 53, unknown 22.7
2097 Female, age 72, unknown 22.0
1848 Female, age 42, unknown 20.2
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 23.2
1947 Male, age 18, unknown 23.5
1795 Male, age 51, unknown 23.2
2502 Female, age 75, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 19.0
1831 Male, age 72, unknown 20.6
2464 Female, age 72, unknown 19.6
2850 Male, age 76, both hemispheres 19.5
1840 Male, age 53, unknown 16.1
Periaquaductal grey, lateral
nTPM: 18.6
2053 Male, age 18, unknown 20.1
2140 Male, age 76, both hemispheres 18.5
2272 Male, age 74, both hemispheres 17.1
Pretectal area
nTPM: 22.0
2007 Male, age 72, unknown 28.2
1816 Male, age 51, unknown 25.7
1817 Female, age 42, unknown 25.6
1815 Male, age 53, unknown 24.9
1944 Female, age 72, unknown 24.2
2316 Male, age 76, right hemisphere 21.8
2407 Male, age 75, both hemispheres 21.4
2825 Male, age 18, unknown 19.9
2667 Female, age 75, unknown 17.4
2224 Female, age 72, unknown 17.3
2273 Male, age 74, both hemispheres 15.8
Red nucleus
nTPM: 25.1
2588 Male, age 74, left hemisphere 30.8
2725 Female, age 75, unknown 30.8
2785 Male, age 18, unknown 27.3
2584 Male, age 75, left hemisphere 26.3
2503 Female, age 72, unknown 25.6
2227 Male, age 72, unknown 24.2
1904 Male, age 53, unknown 24.1
2769 Male, age 72, unknown 23.5
1865 Male, age 51, unknown 23.2
2823 Male, age 76, right hemisphere 23.1
1821 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 20.1
Substantia nigra
nTPM: 20.7
2583 Male, age 75, right hemisphere 25.0
2665 Male, age 74, both hemispheres 24.1
1916 Female, age 42, unknown 22.7
1889 Female, age 72, unknown 22.1
1851 Male, age 51, unknown 21.3
2590 Female, age 75, unknown 20.6
1941 Male, age 53, unknown 20.0
2699 Male, age 18, unknown 19.3
2241 Male, age 72, unknown 16.4
2409 Female, age 72, unknown 15.4
Superior colliculus
nTPM: 22.8
2664 Male, age 75, both hemispheres 27.4
1796 Male, age 53, unknown 24.5
1995 Male, age 72, unknown 23.8
1913 Female, age 42, unknown 23.0
2261 Male, age 18, unknown 23.0
2668 Female, age 75, unknown 23.0
2087 Female, age 72, unknown 22.2
2587 Male, age 74, left hemisphere 21.7
1839 Male, age 51, unknown 20.3
1895 Male, age 76, right hemisphere 18.8
Ventral tegmental area
nTPM: 19.8
2218 Male, age 76, both hemispheres 20.6
2410 Female, age 72, unknown 20.5
1942 Male, age 51, unknown 20.0
2223 Female, age 72, unknown 19.5
2021 Male, age 53, unknown 19.2
1915 Female, age 42, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.0
Samples: 139

Max nTPM: 32.8
Min nTPM: 7.7
Std nTPM: 4.2
Median nTPM: 14.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 32.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 25.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 25.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 24.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 24.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 23.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 23.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.8
Sample A Female 12.6
Sample B Female 11.8
Sample C Male 12.5
Sample D Male 14.4
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.2
Sample A Female 15.9
Sample B Female 13.1
Sample C Male 13.8
Sample D Male 12.2
11.111.212.111.013.0012345678910111213
 		Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 13.0
Min nTPM: 11.0
Sample B Female 13.0
Sample C Male 11.0
Sample D Male 11.2
Superior colliculi
nTPM: 14.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 12.0
Sample A Female 14.3
Sample B Female 12.0
Sample C Male 14.5
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
9.29.39.49.19.60123456789
 		Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 9.1
Sample A Male 9.6
Sample B Male 9.1
Sample C Female 9.3
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70787654 Antisense, RP_050706_04_F10, Mouse strain C57BL/6J (56 days, male) 0.2
69288974 Antisense, RP_050407_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0

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