MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA Brain:192.8 nTPM
GTEx:44.8 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:81.7 nTPM
Mouse:201.5 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.7
2666 Male, age 74, left hemisphere 215.2
2219 Male, age 76, both hemispheres 178.3
2019 Male, age 18, unknown 175.2
2586 Male, age 75, left hemisphere 173.5
2828 Female, age 72, unknown 163.7
1827 Male, age 72, unknown 160.5
1833 Male, age 53, unknown 126.8
1830 Male, age 51, unknown 124.5
2411 Female, age 72, unknown 115.0
1870 Female, age 42, unknown 114.5
Dorsal raphe nucleus
nTPM: 134.1
2298 Female, age 72, unknown 153.7
1828 Male, age 53, unknown 148.3
2047 Male, age 72, unknown 144.1
2750 Male, age 76, both hemispheres 135.8
2016 Female, age 72, unknown 88.5
Inferior colliculus
nTPM: 113.0
2849 Male, age 72, unknown 132.0
1848 Female, age 42, unknown 116.7
2097 Female, age 72, unknown 103.7
1890 Male, age 53, unknown 99.5
Median raphe nucleus
nTPM: 172.1
2220 Male, age 76, midline 172.1
Periaquaductal grey, anterior
nTPM: 171.9
1947 Male, age 18, unknown 190.1
1795 Male, age 51, unknown 171.3
2502 Female, age 75, unknown 154.3
Periaquaductal grey, dorsal
nTPM: 113.5
1831 Male, age 72, unknown 134.1
2850 Male, age 76, both hemispheres 113.5
1840 Male, age 53, unknown 106.0
2464 Female, age 72, unknown 100.3
Periaquaductal grey, lateral
nTPM: 98.2
2053 Male, age 18, unknown 99.2
2272 Male, age 74, both hemispheres 98.9
2140 Male, age 76, both hemispheres 96.4
Pretectal area
nTPM: 192.8
2007 Male, age 72, unknown 284.3
1817 Female, age 42, unknown 282.0
1816 Male, age 51, unknown 271.7
1944 Female, age 72, unknown 258.6
1815 Male, age 53, unknown 226.0
2667 Female, age 75, unknown 200.2
2224 Female, age 72, unknown 139.2
2407 Male, age 75, both hemispheres 136.5
2825 Male, age 18, unknown 127.6
2273 Male, age 74, both hemispheres 98.0
2316 Male, age 76, right hemisphere 96.5
Red nucleus
nTPM: 119.8
2785 Male, age 18, unknown 172.9
2588 Male, age 74, left hemisphere 142.0
2725 Female, age 75, unknown 127.8
2823 Male, age 76, right hemisphere 127.1
1821 Female, age 72, unknown 124.1
2584 Male, age 75, left hemisphere 123.6
1954 Female, age 42, unknown 112.8
1865 Male, age 51, unknown 109.3
2769 Male, age 72, unknown 104.9
2503 Female, age 72, unknown 100.0
2227 Male, age 72, unknown 98.9
1904 Male, age 53, unknown 94.0
Substantia nigra
nTPM: 150.0
1889 Female, age 72, unknown 226.0
2665 Male, age 74, both hemispheres 206.6
1941 Male, age 53, unknown 199.4
1916 Female, age 42, unknown 175.6
1851 Male, age 51, unknown 150.2
2590 Female, age 75, unknown 120.2
2583 Male, age 75, right hemisphere 118.3
2699 Male, age 18, unknown 104.6
2409 Female, age 72, unknown 102.9
2241 Male, age 72, unknown 95.8
Superior colliculus
nTPM: 149.6
2087 Female, age 72, unknown 204.7
2664 Male, age 75, both hemispheres 194.8
2668 Female, age 75, unknown 160.2
1796 Male, age 53, unknown 151.9
2261 Male, age 18, unknown 148.3
1839 Male, age 51, unknown 143.0
1913 Female, age 42, unknown 128.6
1895 Male, age 76, right hemisphere 127.1
2587 Male, age 74, left hemisphere 123.2
1995 Male, age 72, unknown 114.2
Ventral tegmental area
nTPM: 141.0
2218 Male, age 76, both hemispheres 190.2
2410 Female, age 72, unknown 168.4
1915 Female, age 42, unknown 133.9
2021 Male, age 53, unknown 121.3
1942 Male, age 51, unknown 117.0
2223 Female, age 72, unknown 115.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.8
GTEx sample id Sample description nTPM
29.841.056.215.387.5020406080100120140
Brain - Substantia nigra
Average nTPM: 44.8
Samples: 139

Max nTPM: 144.2
Min nTPM: 15.3
Std nTPM: 20.4
Median nTPM: 41.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 140.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 83.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 78.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 76.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 76.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 75.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 73.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.7
FF:10158-103A5 76 years, female 103.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.7
Pig sample Sample description nTPM
38.155.968.620.171.2010203040506070
 		Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 71.2
Min nTPM: 20.1
Sample A Female 71.2
Sample B Female 44.1
Sample C Male 67.7
Sample D Male 20.1
31.551.887.113.7149.8020406080100120140
 		Midbrain
nTPM: 66.8
Samples: 4

Max nTPM: 149.8
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 37.4
Sample C Male 149.8
Sample D Male 66.2
27.532.336.622.840.90510152025303540
 		Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 40.9
Min nTPM: 22.8
Sample B Female 32.3
Sample C Male 40.9
Sample D Male 22.8
63.867.385.261.270.00102030405060708090100110120130
 		Superior colliculi
nTPM: 81.7
Samples: 4

Max nTPM: 130.9
Min nTPM: 61.2
Sample A Female 64.7
Sample B Female 61.2
Sample C Male 130.9
Sample D Male 70.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 201.5
Mouse sample Sample description nTPM
192.3199.4208.6186.7220.5020406080100120140160180200220
 		Midbrain
nTPM: 201.5
Samples: 4

Max nTPM: 220.5
Min nTPM: 186.7
Sample A Male 186.7
Sample B Male 194.2
Sample C Female 220.5
Sample D Female 204.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
656 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 10.2
655 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 8.7

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