MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:21.6 nTPM
GTEx:10.3 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:10.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
1830 Male, age 51, unknown 22.8
1833 Male, age 53, unknown 22.0
2019 Male, age 18, unknown 21.2
2219 Male, age 76, both hemispheres 19.7
1870 Female, age 42, unknown 19.3
2411 Female, age 72, unknown 18.9
2828 Female, age 72, unknown 18.9
2666 Male, age 74, left hemisphere 18.2
1827 Male, age 72, unknown 17.6
2586 Male, age 75, left hemisphere 15.5
Dorsal raphe nucleus
nTPM: 17.8
2016 Female, age 72, unknown 18.9
2750 Male, age 76, both hemispheres 18.4
1828 Male, age 53, unknown 18.1
2047 Male, age 72, unknown 18.0
2298 Female, age 72, unknown 15.4
Inferior colliculus
nTPM: 19.8
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 20.2
1890 Male, age 53, unknown 19.7
2097 Female, age 72, unknown 17.3
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Periaquaductal grey, anterior
nTPM: 17.0
1947 Male, age 18, unknown 18.7
2502 Female, age 75, unknown 16.9
1795 Male, age 51, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 19.6
2850 Male, age 76, both hemispheres 22.1
1831 Male, age 72, unknown 20.8
2464 Female, age 72, unknown 19.0
1840 Male, age 53, unknown 16.4
Periaquaductal grey, lateral
nTPM: 20.5
2272 Male, age 74, both hemispheres 21.5
2140 Male, age 76, both hemispheres 21.2
2053 Male, age 18, unknown 18.8
Pretectal area
nTPM: 20.4
1815 Male, age 53, unknown 21.9
2667 Female, age 75, unknown 21.4
2273 Male, age 74, both hemispheres 21.3
1817 Female, age 42, unknown 21.2
2407 Male, age 75, both hemispheres 20.6
1944 Female, age 72, unknown 20.2
1816 Male, age 51, unknown 19.9
2007 Male, age 72, unknown 19.8
2224 Female, age 72, unknown 19.8
2825 Male, age 18, unknown 19.3
2316 Male, age 76, right hemisphere 18.9
Red nucleus
nTPM: 20.4
2503 Female, age 72, unknown 22.7
2785 Male, age 18, unknown 22.0
1865 Male, age 51, unknown 21.9
1821 Female, age 72, unknown 21.4
2823 Male, age 76, right hemisphere 21.2
1904 Male, age 53, unknown 20.3
1954 Female, age 42, unknown 20.2
2227 Male, age 72, unknown 19.8
2588 Male, age 74, left hemisphere 19.6
2769 Male, age 72, unknown 19.3
2725 Female, age 75, unknown 18.8
2584 Male, age 75, left hemisphere 18.2
Substantia nigra
nTPM: 20.0
2409 Female, age 72, unknown 22.8
1941 Male, age 53, unknown 21.7
2590 Female, age 75, unknown 21.6
1889 Female, age 72, unknown 19.9
2583 Male, age 75, right hemisphere 19.8
2699 Male, age 18, unknown 19.6
2665 Male, age 74, both hemispheres 19.4
1851 Male, age 51, unknown 18.8
2241 Male, age 72, unknown 18.5
1916 Female, age 42, unknown 17.5
Superior colliculus
nTPM: 19.1
1913 Female, age 42, unknown 21.5
1995 Male, age 72, unknown 20.9
2587 Male, age 74, left hemisphere 20.6
1895 Male, age 76, right hemisphere 20.1
1839 Male, age 51, unknown 20.0
2087 Female, age 72, unknown 19.2
2668 Female, age 75, unknown 18.3
1796 Male, age 53, unknown 17.6
2261 Male, age 18, unknown 17.1
2664 Male, age 75, both hemispheres 16.4
Ventral tegmental area
nTPM: 19.0
2410 Female, age 72, unknown 21.9
2218 Male, age 76, both hemispheres 20.3
2223 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 18.1
1915 Female, age 42, unknown 17.6
1942 Male, age 51, unknown 16.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 15.9
Min nTPM: 5.5
Std nTPM: 2.1
Median nTPM: 10.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 15.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 15.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 14.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 13.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.5
Sample A Female 13.0
Sample B Female 12.6
Sample C Male 13.6
Sample D Male 12.5
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 19.7
Min nTPM: 12.8
Sample A Female 13.7
Sample B Female 12.8
Sample C Male 19.7
Sample D Male 15.2
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 14.0
Min nTPM: 12.8
Sample B Female 12.8
Sample C Male 14.0
Sample D Male 13.6
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 15.9
Sample C Male 18.6
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.9
Sample A Male 8.9
Sample B Male 10.3
Sample C Female 11.4
Sample D Female 10.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
74578377 Antisense, RP_060215_01_B12, Mouse strain C57BL/6J (56 days, male) 3.6
73927790 Antisense, RP_051219_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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