MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.5 nTPM
HPA Brain:78.4 nTPM
GTEx:106.5 nTPM
FANTOM5:176.1 Scaled Tags Per Million
Pig:79.6 nTPM
Mouse:164.4 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.8
2586 Male, age 75, left hemisphere 86.8
2666 Male, age 74, left hemisphere 79.2
2411 Female, age 72, unknown 79.0
1827 Male, age 72, unknown 73.5
1870 Female, age 42, unknown 71.4
2019 Male, age 18, unknown 67.4
2828 Female, age 72, unknown 67.2
1830 Male, age 51, unknown 58.4
1833 Male, age 53, unknown 58.2
2219 Male, age 76, both hemispheres 57.3
Dorsal raphe nucleus
nTPM: 69.3
2298 Female, age 72, unknown 79.7
1828 Male, age 53, unknown 71.0
2047 Male, age 72, unknown 69.0
2750 Male, age 76, both hemispheres 65.4
2016 Female, age 72, unknown 61.4
Inferior colliculus
nTPM: 57.7
2097 Female, age 72, unknown 66.2
1890 Male, age 53, unknown 62.1
1848 Female, age 42, unknown 52.4
2849 Male, age 72, unknown 50.1
Median raphe nucleus
nTPM: 67.4
2220 Male, age 76, midline 67.4
Periaquaductal grey, anterior
nTPM: 71.3
1947 Male, age 18, unknown 77.8
2502 Female, age 75, unknown 68.1
1795 Male, age 51, unknown 68.0
Periaquaductal grey, dorsal
nTPM: 61.0
1831 Male, age 72, unknown 63.7
1840 Male, age 53, unknown 62.2
2850 Male, age 76, both hemispheres 59.3
2464 Female, age 72, unknown 58.7
Periaquaductal grey, lateral
nTPM: 56.4
2053 Male, age 18, unknown 63.2
2140 Male, age 76, both hemispheres 55.6
2272 Male, age 74, both hemispheres 50.4
Pretectal area
nTPM: 69.4
1816 Male, age 51, unknown 86.3
1815 Male, age 53, unknown 81.8
2007 Male, age 72, unknown 77.6
1817 Female, age 42, unknown 73.9
1944 Female, age 72, unknown 72.8
2407 Male, age 75, both hemispheres 70.2
2667 Female, age 75, unknown 65.5
2825 Male, age 18, unknown 63.7
2224 Female, age 72, unknown 63.1
2273 Male, age 74, both hemispheres 54.6
2316 Male, age 76, right hemisphere 53.5
Red nucleus
nTPM: 68.2
1821 Female, age 72, unknown 80.5
2584 Male, age 75, left hemisphere 72.7
2725 Female, age 75, unknown 72.1
1904 Male, age 53, unknown 70.2
1865 Male, age 51, unknown 68.8
2503 Female, age 72, unknown 68.7
2588 Male, age 74, left hemisphere 68.6
1954 Female, age 42, unknown 65.5
2785 Male, age 18, unknown 65.0
2769 Male, age 72, unknown 63.8
2227 Male, age 72, unknown 63.4
2823 Male, age 76, right hemisphere 58.8
Substantia nigra
nTPM: 78.4
2241 Male, age 72, unknown 92.3
1851 Male, age 51, unknown 91.0
1916 Female, age 42, unknown 89.4
2583 Male, age 75, right hemisphere 80.3
1889 Female, age 72, unknown 75.1
2665 Male, age 74, both hemispheres 74.6
1941 Male, age 53, unknown 71.9
2699 Male, age 18, unknown 70.1
2590 Female, age 75, unknown 69.9
2409 Female, age 72, unknown 69.0
Superior colliculus
nTPM: 70.0
2664 Male, age 75, both hemispheres 87.9
2668 Female, age 75, unknown 80.0
1913 Female, age 42, unknown 73.4
2087 Female, age 72, unknown 72.8
2261 Male, age 18, unknown 72.3
1796 Male, age 53, unknown 71.5
2587 Male, age 74, left hemisphere 68.2
1995 Male, age 72, unknown 60.9
1895 Male, age 76, right hemisphere 57.9
1839 Male, age 51, unknown 55.7
Ventral tegmental area
nTPM: 74.4
2410 Female, age 72, unknown 83.0
1915 Female, age 42, unknown 81.6
1942 Male, age 51, unknown 77.1
2218 Male, age 76, both hemispheres 70.1
2223 Female, age 72, unknown 68.5
2021 Male, age 53, unknown 66.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.5
Samples: 139

Max nTPM: 155.9
Min nTPM: 66.8
Std nTPM: 16.3
Median nTPM: 104.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 155.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 142.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 142.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 141.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 140.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 139.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 136.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 133.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.1
FF:10158-103A5 76 years, female 176.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.6
Samples: 4

Max nTPM: 99.5
Min nTPM: 54.9
Sample A Female 99.5
Sample B Female 70.5
Sample C Male 93.5
Sample D Male 54.9
Midbrain
nTPM: 75.7
Samples: 4

Max nTPM: 86.1
Min nTPM: 65.9
Sample A Female 65.9
Sample B Female 75.2
Sample C Male 86.1
Sample D Male 75.6
Periaqueductal gray
nTPM: 64.7
Samples: 3

Max nTPM: 81.2
Min nTPM: 56.4
Sample B Female 56.4
Sample C Male 81.2
Sample D Male 56.6
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 85.0
Min nTPM: 73.5
Sample A Female 85.0
Sample B Female 75.0
Sample C Male 79.8
Sample D Male 73.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.4
Samples: 4

Max nTPM: 169.0
Min nTPM: 159.0
Sample A Male 169.0
Sample B Male 162.4
Sample C Female 159.0
Sample D Female 167.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
749 Antisense, RP_Baylor_102940, Mouse strain C57BL/6J (56 days, male) 0.7
748 Antisense, RP_Baylor_102940, Mouse strain C57BL/6J (56 days, male) 0.2

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