HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.5 nTPM
HPA Brain:32.2 nTPM
GTEx:22.5 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:7.4 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023050Antibody HPA024836
Glial cells LowLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.2
Sample id Sample description nTPM
Hippocampus
nTPM: 28.3
2529 Female, age 94, left hemisphere 36.0
1911 Female, age 85, right hemisphere 31.9
2148 Female, age 91, left hemisphere 28.7
1855 Male, age 76, left hemisphere 27.1
2621 Female, age 67, right hemisphere 23.2
1898 Male, age 80, left hemisphere 23.1
Dentate gyrus
nTPM: 25.5
2530 Female, age 94, left hemisphere 30.8
2010 Male, age 76, both hemispheres 28.7
2528 Male, age 74, both hemispheres 25.6
2246 Female, age 85, both hemispheres 24.9
1927 Female, age 91, both hemispheres 21.6
2531 Female, age 67, both hemispheres 21.2
Entorhinal gyrus
nTPM: 30.0
2117 Female, age 91, right hemisphere 40.0
2764 Male, age 80, right hemisphere 34.3
2613 Female, age 94, left hemisphere 30.6
2686 Male, age 75, right hemisphere 29.9
1938 Female, age 85, left hemisphere 23.1
1787 Male, age 76, left hemisphere 22.1
Hippocampus, CA1
nTPM: 24.1
2082 Female, age 91, right hemisphere 29.9
1873 Female, age 85, both hemispheres 27.7
2527 Male, age 74, both hemispheres 23.9
2045 Male, age 76, both hemispheres 19.8
2749 Male, age 80, left hemisphere 19.3
Hippocampus, CA2
nTPM: 27.0
2113 Female, age 91, right hemisphere 31.0
1963 Male, age 80, left hemisphere 29.4
2249 Male, age 74, both hemispheres 27.5
1940 Female, age 85, left hemisphere 27.4
2437 Female, age 94, left hemisphere 27.4
1892 Male, age 76, both hemispheres 19.5
Hippocampus, CA3
nTPM: 24.5
1891 Female, age 85, both hemispheres 33.0
2436 Male, age 74, both hemispheres 28.4
1867 Male, age 76, both hemispheres 27.1
2861 Female, age 67, both hemispheres 20.0
2620 Female, age 94, left hemisphere 19.5
2137 Male, age 80, left hemisphere 18.9
Parahippocampal cortex
nTPM: 24.8
2692 Male, age 74, both hemispheres 35.0
1990 Female, age 91, right hemisphere 28.7
2532 Female, age 72, left hemisphere 28.3
2245 Female, age 91, both hemispheres 25.5
2018 Male, age 76, both hemispheres 25.1
1850 Male, age 80, both hemispheres 24.2
2693 Female, age 94, both hemispheres 20.8
1933 Female, age 85, both hemispheres 20.6
2622 Female, age 67, right hemisphere 19.8
2250 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 20.4
2521 Female, age 94, right hemisphere 26.4
1794 Male, age 80, right hemisphere 20.2
1847 Female, age 91, left hemisphere 20.1
2848 Male, age 76, right hemisphere 18.1
1841 Female, age 85, right hemisphere 17.2
Subiculum
nTPM: 32.2
2042 Male, age 76, both hemispheres 42.2
2438 Female, age 94, left hemisphere 33.9
1901 Male, age 80, both hemispheres 32.9
2729 Female, age 91, right hemisphere 29.7
2619 Male, age 74, both hemispheres 29.2
1977 Female, age 85, both hemispheres 25.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.5
Samples: 197

Max nTPM: 53.5
Min nTPM: 6.2
Std nTPM: 8.8
Median nTPM: 20.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 53.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 52.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 48.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 43.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 42.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 42.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 41.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 39.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 37.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 37.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.7
FF:10153-102I9 76 years, female 21.2
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Subiculum
nTPM: 23.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 19.0
Sample A Female 34.7
Sample B Female 21.5
Sample C Male 19.1
Sample D Male 19.0
Dorsal hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 19.1
Sample A Female 36.2
Sample B Female 23.7
Sample C Male 33.5
Sample D Male 19.1
Entorhinal cortex
nTPM: 26.7
Samples: 4

Max nTPM: 29.5
Min nTPM: 23.1
Sample A Female 27.4
Sample B Female 26.6
Sample C Male 29.5
Sample D Male 23.1
Ventral hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 19.8
Sample A Female 27.4
Sample B Female 19.8
Sample C Male 32.3
Sample D Male 24.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.3
Samples: 4

Max nTPM: 7.4
Min nTPM: 7.1
Sample A Male 7.4
Sample B Male 7.4
Sample C Female 7.1
Sample D Female 7.1
Hippocampal formation
nTPM: 7.4
Samples: 4

Max nTPM: 9.5
Min nTPM: 5.1
Sample A Male 5.1
Sample B Male 7.7
Sample C Female 7.2
Sample D Female 9.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
532736 Antisense, RP_040825_01_H10, Mouse strain C57BL/6J (56 days, male) 3.5

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