MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:258.9 nTPM
HPA Brain:115.6 nTPM
GTEx:258.9 nTPM
FANTOM5:88.4 Scaled Tags Per Million
Pig:147.1 nTPM
Mouse:99.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.5
2411 Female, age 72, unknown 115.4
1870 Female, age 42, unknown 101.7
2019 Male, age 18, unknown 96.5
2586 Male, age 75, left hemisphere 86.5
1830 Male, age 51, unknown 85.4
2219 Male, age 76, both hemispheres 84.0
1833 Male, age 53, unknown 81.8
1827 Male, age 72, unknown 77.0
2828 Female, age 72, unknown 58.5
2666 Male, age 74, left hemisphere 58.2
Dorsal raphe nucleus
nTPM: 103.9
2750 Male, age 76, both hemispheres 113.5
2298 Female, age 72, unknown 111.1
2047 Male, age 72, unknown 102.9
1828 Male, age 53, unknown 100.7
2016 Female, age 72, unknown 91.4
Inferior colliculus
nTPM: 97.6
2097 Female, age 72, unknown 117.4
1890 Male, age 53, unknown 101.4
1848 Female, age 42, unknown 95.8
2849 Male, age 72, unknown 75.9
Median raphe nucleus
nTPM: 108.1
2220 Male, age 76, midline 108.1
Periaquaductal grey, anterior
nTPM: 84.9
2502 Female, age 75, unknown 91.6
1947 Male, age 18, unknown 90.8
1795 Male, age 51, unknown 72.3
Periaquaductal grey, dorsal
nTPM: 81.3
1840 Male, age 53, unknown 89.5
2464 Female, age 72, unknown 82.7
2850 Male, age 76, both hemispheres 81.1
1831 Male, age 72, unknown 71.9
Periaquaductal grey, lateral
nTPM: 71.6
2053 Male, age 18, unknown 78.5
2272 Male, age 74, both hemispheres 72.3
2140 Male, age 76, both hemispheres 64.1
Pretectal area
nTPM: 91.9
2667 Female, age 75, unknown 114.5
1944 Female, age 72, unknown 109.0
1816 Male, age 51, unknown 105.9
1817 Female, age 42, unknown 104.2
2007 Male, age 72, unknown 101.8
2224 Female, age 72, unknown 101.6
1815 Male, age 53, unknown 96.5
2273 Male, age 74, both hemispheres 76.9
2825 Male, age 18, unknown 73.5
2316 Male, age 76, right hemisphere 67.7
2407 Male, age 75, both hemispheres 58.9
Red nucleus
nTPM: 96.4
1821 Female, age 72, unknown 143.8
1865 Male, age 51, unknown 108.5
2503 Female, age 72, unknown 103.7
1904 Male, age 53, unknown 100.7
1954 Female, age 42, unknown 100.0
2823 Male, age 76, right hemisphere 95.4
2769 Male, age 72, unknown 94.9
2227 Male, age 72, unknown 93.4
2725 Female, age 75, unknown 92.5
2785 Male, age 18, unknown 88.1
2588 Male, age 74, left hemisphere 69.1
2584 Male, age 75, left hemisphere 66.8
Substantia nigra
nTPM: 115.6
2241 Male, age 72, unknown 173.6
2409 Female, age 72, unknown 149.0
1916 Female, age 42, unknown 134.2
1851 Male, age 51, unknown 122.9
1889 Female, age 72, unknown 119.1
1941 Male, age 53, unknown 112.9
2699 Male, age 18, unknown 101.3
2665 Male, age 74, both hemispheres 93.9
2583 Male, age 75, right hemisphere 82.0
2590 Female, age 75, unknown 66.8
Superior colliculus
nTPM: 82.3
2668 Female, age 75, unknown 101.2
2587 Male, age 74, left hemisphere 91.9
2087 Female, age 72, unknown 91.8
2261 Male, age 18, unknown 85.8
1895 Male, age 76, right hemisphere 85.6
1913 Female, age 42, unknown 81.7
1796 Male, age 53, unknown 76.1
1995 Male, age 72, unknown 72.4
1839 Male, age 51, unknown 70.0
2664 Male, age 75, both hemispheres 66.6
Ventral tegmental area
nTPM: 113.7
2223 Female, age 72, unknown 133.9
2410 Female, age 72, unknown 129.0
1915 Female, age 42, unknown 117.7
2218 Male, age 76, both hemispheres 107.6
1942 Male, age 51, unknown 99.9
2021 Male, age 53, unknown 94.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 258.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 258.9
Samples: 139

Max nTPM: 507.1
Min nTPM: 135.0
Std nTPM: 56.0
Median nTPM: 257.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 507.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 420.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 389.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 388.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 381.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 373.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 370.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 347.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 345.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 344.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 342.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.4
FF:10158-103A5 76 years, female 88.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.4
Samples: 4

Max nTPM: 156.5
Min nTPM: 80.1
Sample A Female 156.5
Sample B Female 92.5
Sample C Male 120.5
Sample D Male 80.1
Midbrain
nTPM: 125.8
Samples: 4

Max nTPM: 155.1
Min nTPM: 89.1
Sample A Female 89.1
Sample B Female 116.4
Sample C Male 155.1
Sample D Male 142.4
Periaqueductal gray
nTPM: 79.0
Samples: 3

Max nTPM: 85.5
Min nTPM: 68.4
Sample B Female 83.0
Sample C Male 85.5
Sample D Male 68.4
Superior colliculi
nTPM: 147.1
Samples: 4

Max nTPM: 194.8
Min nTPM: 106.1
Sample A Female 164.2
Sample B Female 106.1
Sample C Male 194.8
Sample D Male 123.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.6
Samples: 4

Max nTPM: 107.3
Min nTPM: 96.0
Sample A Male 107.3
Sample B Male 96.0
Sample C Female 98.2
Sample D Female 97.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
2292 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.1
2291 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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