MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.2 nTPM
HPA Brain:233.1 nTPM
GTEx:50.2 nTPM
FANTOM5:309.1 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:59.8 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 233.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.6
2586 Male, age 75, left hemisphere 271.6
2411 Female, age 72, unknown 217.9
2019 Male, age 18, unknown 217.6
1830 Male, age 51, unknown 210.7
1833 Male, age 53, unknown 197.1
1870 Female, age 42, unknown 181.6
2828 Female, age 72, unknown 176.2
2666 Male, age 74, left hemisphere 172.0
1827 Male, age 72, unknown 150.6
2219 Male, age 76, both hemispheres 141.0
Dorsal raphe nucleus
nTPM: 140.8
2750 Male, age 76, both hemispheres 226.4
1828 Male, age 53, unknown 136.4
2016 Female, age 72, unknown 126.8
2047 Male, age 72, unknown 110.0
2298 Female, age 72, unknown 104.3
Inferior colliculus
nTPM: 130.2
1890 Male, age 53, unknown 136.8
2849 Male, age 72, unknown 132.0
1848 Female, age 42, unknown 128.0
2097 Female, age 72, unknown 123.9
Median raphe nucleus
nTPM: 118.2
2220 Male, age 76, midline 118.2
Periaquaductal grey, anterior
nTPM: 161.1
1947 Male, age 18, unknown 170.6
2502 Female, age 75, unknown 168.1
1795 Male, age 51, unknown 144.6
Periaquaductal grey, dorsal
nTPM: 99.5
2464 Female, age 72, unknown 158.5
1831 Male, age 72, unknown 99.4
1840 Male, age 53, unknown 82.7
2850 Male, age 76, both hemispheres 57.3
Periaquaductal grey, lateral
nTPM: 114.8
2272 Male, age 74, both hemispheres 139.2
2053 Male, age 18, unknown 124.6
2140 Male, age 76, both hemispheres 80.6
Pretectal area
nTPM: 148.1
2316 Male, age 76, right hemisphere 221.6
2407 Male, age 75, both hemispheres 209.6
2007 Male, age 72, unknown 171.5
1815 Male, age 53, unknown 166.2
2825 Male, age 18, unknown 142.3
1817 Female, age 42, unknown 134.2
2667 Female, age 75, unknown 130.8
1816 Male, age 51, unknown 120.9
2224 Female, age 72, unknown 119.8
1944 Female, age 72, unknown 113.8
2273 Male, age 74, both hemispheres 98.2
Red nucleus
nTPM: 233.1
2823 Male, age 76, right hemisphere 281.5
2584 Male, age 75, left hemisphere 262.0
1904 Male, age 53, unknown 258.7
2785 Male, age 18, unknown 252.5
2769 Male, age 72, unknown 248.6
2227 Male, age 72, unknown 246.6
2588 Male, age 74, left hemisphere 246.4
1865 Male, age 51, unknown 238.4
2503 Female, age 72, unknown 222.6
1821 Female, age 72, unknown 190.1
2725 Female, age 75, unknown 176.5
1954 Female, age 42, unknown 173.9
Substantia nigra
nTPM: 150.3
2583 Male, age 75, right hemisphere 223.2
2590 Female, age 75, unknown 188.8
1851 Male, age 51, unknown 163.2
2409 Female, age 72, unknown 159.7
1889 Female, age 72, unknown 146.5
1941 Male, age 53, unknown 140.1
2699 Male, age 18, unknown 126.4
2665 Male, age 74, both hemispheres 123.8
2241 Male, age 72, unknown 117.9
1916 Female, age 42, unknown 113.7
Superior colliculus
nTPM: 177.0
1913 Female, age 42, unknown 241.9
1995 Male, age 72, unknown 225.0
1895 Male, age 76, right hemisphere 202.9
2668 Female, age 75, unknown 185.6
1839 Male, age 51, unknown 172.4
2664 Male, age 75, both hemispheres 164.1
2587 Male, age 74, left hemisphere 158.3
1796 Male, age 53, unknown 156.7
2261 Male, age 18, unknown 137.7
2087 Female, age 72, unknown 125.9
Ventral tegmental area
nTPM: 155.8
2223 Female, age 72, unknown 188.7
2410 Female, age 72, unknown 178.6
1942 Male, age 51, unknown 161.3
2021 Male, age 53, unknown 141.2
2218 Male, age 76, both hemispheres 137.9
1915 Female, age 42, unknown 126.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 195.7
Min nTPM: 8.5
Std nTPM: 28.9
Median nTPM: 43.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 195.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 170.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 131.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 117.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 107.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 106.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 104.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 101.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 99.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 94.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 309.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 309.1
FF:10158-103A5 76 years, female 309.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.3
Samples: 4

Max nTPM: 48.7
Min nTPM: 30.1
Sample A Female 48.7
Sample B Female 30.1
Sample C Male 32.8
Sample D Male 41.6
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 53.2
Min nTPM: 25.3
Sample A Female 53.2
Sample B Female 32.2
Sample C Male 36.9
Sample D Male 25.3
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 28.6
Min nTPM: 23.6
Sample B Female 28.6
Sample C Male 24.1
Sample D Male 23.6
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 38.2
Min nTPM: 12.4
Sample A Female 38.2
Sample B Female 12.4
Sample C Male 34.2
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 66.2
Min nTPM: 51.9
Sample A Male 66.2
Sample B Male 51.9
Sample C Female 59.2
Sample D Female 61.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
71213880 Antisense, RP_050816_04_H10, Mouse strain C57BL/6J (56 days, male) 11.2

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