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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2.7
nTPM
HPA Brain:
19.7
nTPM
GTEx:
2.7
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
19.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 18.1
2586
Male, age 75, left hemisphere
20.1
2219
Male, age 76, both hemispheres
19.9
2828
Female, age 72, unknown
19.6
2411
Female, age 72, unknown
19.3
2019
Male, age 18, unknown
18.6
1833
Male, age 53, unknown
17.4
1870
Female, age 42, unknown
17.3
1830
Male, age 51, unknown
17.0
1827
Male, age 72, unknown
16.4
2666
Male, age 74, left hemisphere
15.6
Dorsal raphe nucleus nTPM: 17.2
2750
Male, age 76, both hemispheres
19.4
2298
Female, age 72, unknown
19.2
2047
Male, age 72, unknown
16.6
1828
Male, age 53, unknown
15.5
2016
Female, age 72, unknown
15.2
Inferior colliculus nTPM: 15.1
2097
Female, age 72, unknown
15.6
1890
Male, age 53, unknown
15.3
2849
Male, age 72, unknown
15.0
1848
Female, age 42, unknown
14.7
Median raphe nucleus nTPM: 19.7
2220
Male, age 76, midline
19.7
Periaquaductal grey, anterior nTPM: 18.9
2502
Female, age 75, unknown
19.9
1947
Male, age 18, unknown
19.0
1795
Male, age 51, unknown
17.7
Periaquaductal grey, dorsal nTPM: 15.1
2464
Female, age 72, unknown
18.9
2850
Male, age 76, both hemispheres
14.1
1840
Male, age 53, unknown
13.8
1831
Male, age 72, unknown
13.7
Periaquaductal grey, lateral nTPM: 17.6
2272
Male, age 74, both hemispheres
21.9
2140
Male, age 76, both hemispheres
15.7
2053
Male, age 18, unknown
15.2
Pretectal area nTPM: 17.2
2316
Male, age 76, right hemisphere
22.9
2224
Female, age 72, unknown
20.6
2007
Male, age 72, unknown
18.6
2273
Male, age 74, both hemispheres
17.2
1815
Male, age 53, unknown
16.6
1816
Male, age 51, unknown
16.2
1817
Female, age 42, unknown
16.1
1944
Female, age 72, unknown
15.9
2667
Female, age 75, unknown
15.5
2407
Male, age 75, both hemispheres
15.0
2825
Male, age 18, unknown
14.1
Red nucleus nTPM: 18.1
2785
Male, age 18, unknown
20.9
2823
Male, age 76, right hemisphere
20.6
2769
Male, age 72, unknown
20.4
2588
Male, age 74, left hemisphere
19.5
1904
Male, age 53, unknown
19.1
1865
Male, age 51, unknown
18.9
2227
Male, age 72, unknown
18.7
2503
Female, age 72, unknown
17.6
2584
Male, age 75, left hemisphere
16.1
2725
Female, age 75, unknown
15.9
1821
Female, age 72, unknown
15.1
1954
Female, age 42, unknown
14.5
Substantia nigra nTPM: 16.2
2590
Female, age 75, unknown
20.8
1851
Male, age 51, unknown
17.4
1916
Female, age 42, unknown
16.9
2583
Male, age 75, right hemisphere
16.8
2699
Male, age 18, unknown
16.7
1941
Male, age 53, unknown
15.6
2409
Female, age 72, unknown
15.6
2665
Male, age 74, both hemispheres
14.9
1889
Female, age 72, unknown
13.9
2241
Male, age 72, unknown
13.2
Superior colliculus nTPM: 16.5
1796
Male, age 53, unknown
19.7
1995
Male, age 72, unknown
19.2
1913
Female, age 42, unknown
18.1
2261
Male, age 18, unknown
17.9
2087
Female, age 72, unknown
17.5
1839
Male, age 51, unknown
16.0
2587
Male, age 74, left hemisphere
15.4
1895
Male, age 76, right hemisphere
15.1
2668
Female, age 75, unknown
14.8
2664
Male, age 75, both hemispheres
11.3
Ventral tegmental area nTPM: 17.4
1942
Male, age 51, unknown
18.5
2218
Male, age 76, both hemispheres
18.2
2021
Male, age 53, unknown
17.7
2223
Female, age 72, unknown
17.2
1915
Female, age 42, unknown
16.6
2410
Female, age 72, unknown
16.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
2.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2.7
Samples: 139
Max nTPM: 13.7
Min nTPM: 0.0
Std nTPM: 2.9
Median nTPM: 1.7
The Human Protein Atlas project is funded
