MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:25.8 nTPM
GTEx:7.6 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:19.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
1830 Male, age 51, unknown 30.5
1870 Female, age 42, unknown 29.7
1833 Male, age 53, unknown 28.4
2411 Female, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 28.0
2019 Male, age 18, unknown 25.8
2586 Male, age 75, left hemisphere 19.9
2828 Female, age 72, unknown 19.1
1827 Male, age 72, unknown 18.2
2666 Male, age 74, left hemisphere 15.6
Dorsal raphe nucleus
nTPM: 22.8
2016 Female, age 72, unknown 29.9
2298 Female, age 72, unknown 24.5
2750 Male, age 76, both hemispheres 23.2
1828 Male, age 53, unknown 19.8
2047 Male, age 72, unknown 16.7
Inferior colliculus
nTPM: 20.2
1848 Female, age 42, unknown 22.4
2849 Male, age 72, unknown 20.2
2097 Female, age 72, unknown 19.8
1890 Male, age 53, unknown 18.4
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 20.6
1947 Male, age 18, unknown 18.3
1795 Male, age 51, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 20.6
2464 Female, age 72, unknown 22.7
2850 Male, age 76, both hemispheres 21.3
1831 Male, age 72, unknown 19.9
1840 Male, age 53, unknown 18.7
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 22.9
2140 Male, age 76, both hemispheres 21.0
2053 Male, age 18, unknown 19.2
Pretectal area
nTPM: 19.9
2273 Male, age 74, both hemispheres 28.3
2407 Male, age 75, both hemispheres 24.5
2316 Male, age 76, right hemisphere 24.1
2224 Female, age 72, unknown 23.8
2825 Male, age 18, unknown 23.2
2667 Female, age 75, unknown 21.4
1815 Male, age 53, unknown 20.8
1817 Female, age 42, unknown 16.0
2007 Male, age 72, unknown 15.5
1944 Female, age 72, unknown 10.5
1816 Male, age 51, unknown 10.3
Red nucleus
nTPM: 25.8
1821 Female, age 72, unknown 31.6
1904 Male, age 53, unknown 30.7
1865 Male, age 51, unknown 30.6
2227 Male, age 72, unknown 29.8
1954 Female, age 42, unknown 29.3
2785 Male, age 18, unknown 29.2
2769 Male, age 72, unknown 28.5
2503 Female, age 72, unknown 25.3
2823 Male, age 76, right hemisphere 20.5
2584 Male, age 75, left hemisphere 19.6
2725 Female, age 75, unknown 17.5
2588 Male, age 74, left hemisphere 16.9
Substantia nigra
nTPM: 19.2
2409 Female, age 72, unknown 28.6
2583 Male, age 75, right hemisphere 21.1
2590 Female, age 75, unknown 21.1
2699 Male, age 18, unknown 20.2
2241 Male, age 72, unknown 19.7
1851 Male, age 51, unknown 18.8
1889 Female, age 72, unknown 17.5
1941 Male, age 53, unknown 17.5
2665 Male, age 74, both hemispheres 14.8
1916 Female, age 42, unknown 12.4
Superior colliculus
nTPM: 22.8
1913 Female, age 42, unknown 35.3
1995 Male, age 72, unknown 33.7
1839 Male, age 51, unknown 26.5
1895 Male, age 76, right hemisphere 23.5
2587 Male, age 74, left hemisphere 22.6
2668 Female, age 75, unknown 21.4
2664 Male, age 75, both hemispheres 19.9
1796 Male, age 53, unknown 18.1
2261 Male, age 18, unknown 13.9
2087 Female, age 72, unknown 13.1
Ventral tegmental area
nTPM: 21.1
1942 Male, age 51, unknown 23.6
2223 Female, age 72, unknown 23.3
2021 Male, age 53, unknown 23.0
2410 Female, age 72, unknown 22.1
1915 Female, age 42, unknown 19.2
2218 Male, age 76, both hemispheres 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 18.5
Min nTPM: 3.5
Std nTPM: 3.0
Median nTPM: 6.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.8
FF:10158-103A5 76 years, female 23.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.3
Sample A Female 10.2
Sample B Female 11.1
Sample C Male 8.3
Sample D Male 8.5
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 6.3
Sample A Female 13.4
Sample B Female 8.2
Sample C Male 6.3
Sample D Male 7.8
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 11.0
Min nTPM: 8.4
Sample B Female 8.4
Sample C Male 9.8
Sample D Male 11.0
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.3
Sample A Female 9.0
Sample B Female 8.9
Sample C Male 5.3
Sample D Male 7.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.0
Sample A Male 17.0
Sample B Male 20.5
Sample C Female 19.8
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70598389 Antisense, RP_050412_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1
77332088 Antisense, RP_070116_02_A05, Mouse strain C57BL/6J (56 days, male) 0.1

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