MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA Brain:29.9 nTPM
GTEx:45.3 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:13.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2586 Male, age 75, left hemisphere 31.8
2666 Male, age 74, left hemisphere 29.6
2019 Male, age 18, unknown 27.8
2411 Female, age 72, unknown 26.6
1870 Female, age 42, unknown 26.4
1827 Male, age 72, unknown 26.1
1833 Male, age 53, unknown 25.0
1830 Male, age 51, unknown 23.8
2828 Female, age 72, unknown 22.1
2219 Male, age 76, both hemispheres 19.3
Dorsal raphe nucleus
nTPM: 28.0
2047 Male, age 72, unknown 32.3
2298 Female, age 72, unknown 29.9
1828 Male, age 53, unknown 28.4
2750 Male, age 76, both hemispheres 24.8
2016 Female, age 72, unknown 24.4
Inferior colliculus
nTPM: 27.2
1848 Female, age 42, unknown 29.2
2849 Male, age 72, unknown 27.7
2097 Female, age 72, unknown 26.0
1890 Male, age 53, unknown 25.9
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 29.0
1947 Male, age 18, unknown 31.6
2502 Female, age 75, unknown 27.8
1795 Male, age 51, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 25.8
1840 Male, age 53, unknown 28.4
2850 Male, age 76, both hemispheres 27.9
2464 Female, age 72, unknown 24.0
1831 Male, age 72, unknown 23.0
Periaquaductal grey, lateral
nTPM: 22.6
2140 Male, age 76, both hemispheres 24.8
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 20.7
Pretectal area
nTPM: 25.1
2007 Male, age 72, unknown 31.2
1817 Female, age 42, unknown 29.1
1944 Female, age 72, unknown 28.5
2316 Male, age 76, right hemisphere 25.9
1816 Male, age 51, unknown 25.2
2224 Female, age 72, unknown 24.9
1815 Male, age 53, unknown 24.0
2825 Male, age 18, unknown 23.8
2667 Female, age 75, unknown 22.9
2273 Male, age 74, both hemispheres 22.1
2407 Male, age 75, both hemispheres 18.7
Red nucleus
nTPM: 23.7
2785 Male, age 18, unknown 27.8
2588 Male, age 74, left hemisphere 27.4
1821 Female, age 72, unknown 25.3
2769 Male, age 72, unknown 24.3
2227 Male, age 72, unknown 24.0
1865 Male, age 51, unknown 23.3
2725 Female, age 75, unknown 22.7
2503 Female, age 72, unknown 22.6
1954 Female, age 42, unknown 22.4
1904 Male, age 53, unknown 22.2
2584 Male, age 75, left hemisphere 21.7
2823 Male, age 76, right hemisphere 20.5
Substantia nigra
nTPM: 28.9
1916 Female, age 42, unknown 35.4
2665 Male, age 74, both hemispheres 32.0
1851 Male, age 51, unknown 31.4
2409 Female, age 72, unknown 30.2
1941 Male, age 53, unknown 29.8
2583 Male, age 75, right hemisphere 28.6
2590 Female, age 75, unknown 27.1
1889 Female, age 72, unknown 26.9
2699 Male, age 18, unknown 24.3
2241 Male, age 72, unknown 23.3
Superior colliculus
nTPM: 25.2
2668 Female, age 75, unknown 31.0
1796 Male, age 53, unknown 28.4
1839 Male, age 51, unknown 27.0
2587 Male, age 74, left hemisphere 26.0
2664 Male, age 75, both hemispheres 25.8
2087 Female, age 72, unknown 24.7
2261 Male, age 18, unknown 24.0
1895 Male, age 76, right hemisphere 22.4
1995 Male, age 72, unknown 21.6
1913 Female, age 42, unknown 20.5
Ventral tegmental area
nTPM: 26.6
2410 Female, age 72, unknown 31.2
1915 Female, age 42, unknown 29.3
2218 Male, age 76, both hemispheres 25.8
1942 Male, age 51, unknown 25.3
2223 Female, age 72, unknown 24.4
2021 Male, age 53, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 139

Max nTPM: 72.5
Min nTPM: 22.1
Std nTPM: 9.9
Median nTPM: 45.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 72.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 70.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 64.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 62.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.3
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.0
Sample A Female 10.2
Sample B Female 7.0
Sample C Male 8.2
Sample D Male 7.8
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.7
Sample A Female 11.3
Sample B Female 7.0
Sample C Male 7.7
Sample D Male 6.7
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 9.2
Min nTPM: 7.5
Sample B Female 7.5
Sample C Male 9.2
Sample D Male 8.4
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.7
Sample A Female 11.7
Sample B Female 9.7
Sample C Male 8.7
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.0
Sample A Male 13.4
Sample B Male 15.2
Sample C Female 11.0
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
71735827 Antisense, RP_051010_03_C01, Mouse strain C57BL/6J (56 days, male) 5.5

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