MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:18.3 nTPM
GTEx:9.6 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:30.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2666 Male, age 74, left hemisphere 19.5
2586 Male, age 75, left hemisphere 19.2
1830 Male, age 51, unknown 18.4
1870 Female, age 42, unknown 17.4
1833 Male, age 53, unknown 16.8
1827 Male, age 72, unknown 16.1
2219 Male, age 76, both hemispheres 15.4
2828 Female, age 72, unknown 14.9
2411 Female, age 72, unknown 14.8
2019 Male, age 18, unknown 9.9
Dorsal raphe nucleus
nTPM: 15.9
2047 Male, age 72, unknown 17.5
1828 Male, age 53, unknown 17.3
2016 Female, age 72, unknown 15.8
2750 Male, age 76, both hemispheres 15.2
2298 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 18.3
1848 Female, age 42, unknown 20.7
2849 Male, age 72, unknown 20.7
1890 Male, age 53, unknown 16.0
2097 Female, age 72, unknown 15.5
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 17.2
1947 Male, age 18, unknown 21.6
2502 Female, age 75, unknown 15.3
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 17.4
1831 Male, age 72, unknown 15.0
2464 Female, age 72, unknown 14.8
2850 Male, age 76, both hemispheres 14.1
Periaquaductal grey, lateral
nTPM: 14.1
2053 Male, age 18, unknown 15.7
2140 Male, age 76, both hemispheres 14.7
2272 Male, age 74, both hemispheres 11.8
Pretectal area
nTPM: 13.2
2825 Male, age 18, unknown 20.5
2316 Male, age 76, right hemisphere 16.2
2224 Female, age 72, unknown 15.9
2407 Male, age 75, both hemispheres 14.1
2667 Female, age 75, unknown 14.1
1817 Female, age 42, unknown 11.8
1815 Male, age 53, unknown 11.6
2273 Male, age 74, both hemispheres 11.0
1944 Female, age 72, unknown 10.9
2007 Male, age 72, unknown 10.3
1816 Male, age 51, unknown 9.1
Red nucleus
nTPM: 15.8
2769 Male, age 72, unknown 17.9
2584 Male, age 75, left hemisphere 17.3
2588 Male, age 74, left hemisphere 17.3
1865 Male, age 51, unknown 16.6
2725 Female, age 75, unknown 16.6
2227 Male, age 72, unknown 16.5
2823 Male, age 76, right hemisphere 16.5
1821 Female, age 72, unknown 16.3
2503 Female, age 72, unknown 15.6
1954 Female, age 42, unknown 15.4
1904 Male, age 53, unknown 12.9
2785 Male, age 18, unknown 10.3
Substantia nigra
nTPM: 18.0
1916 Female, age 42, unknown 22.3
2699 Male, age 18, unknown 21.0
2665 Male, age 74, both hemispheres 19.7
1941 Male, age 53, unknown 19.3
2241 Male, age 72, unknown 19.2
1851 Male, age 51, unknown 18.6
2583 Male, age 75, right hemisphere 16.3
2409 Female, age 72, unknown 15.3
2590 Female, age 75, unknown 14.3
1889 Female, age 72, unknown 13.8
Superior colliculus
nTPM: 14.9
1839 Male, age 51, unknown 19.1
1895 Male, age 76, right hemisphere 18.9
2668 Female, age 75, unknown 17.4
2664 Male, age 75, both hemispheres 17.1
1796 Male, age 53, unknown 15.3
2587 Male, age 74, left hemisphere 13.2
2261 Male, age 18, unknown 13.0
2087 Female, age 72, unknown 12.0
1913 Female, age 42, unknown 11.6
1995 Male, age 72, unknown 11.2
Ventral tegmental area
nTPM: 17.5
1915 Female, age 42, unknown 20.0
2021 Male, age 53, unknown 17.9
2223 Female, age 72, unknown 17.5
2410 Female, age 72, unknown 17.2
1942 Male, age 51, unknown 16.8
2218 Male, age 76, both hemispheres 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 14.9
Min nTPM: 5.7
Std nTPM: 1.8
Median nTPM: 9.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 13.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.5
Samples: 4

Max nTPM: 53.7
Min nTPM: 39.3
Sample A Female 53.7
Sample B Female 44.4
Sample C Male 39.3
Sample D Male 40.4
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 49.7
Min nTPM: 30.5
Sample A Female 30.5
Sample B Female 46.5
Sample C Male 37.9
Sample D Male 49.7
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 39.7
Min nTPM: 32.7
Sample B Female 39.7
Sample C Male 36.5
Sample D Male 32.7
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 63.7
Min nTPM: 28.3
Sample A Female 63.7
Sample B Female 28.3
Sample C Male 51.4
Sample D Male 55.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 32.1
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 30.9
Sample C Female 32.1
Sample D Female 29.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75931461 Antisense, RP_060601_03_D09, Mouse strain C57BL/6J (56 days, male) 0.7

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