MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.1 nTPM
HPA Brain:117.1 nTPM
GTEx:74.1 nTPM
FANTOM5:147.8 Scaled Tags Per Million
Pig:61.0 nTPM
Mouse:35.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.3
2586 Male, age 75, left hemisphere 136.8
1833 Male, age 53, unknown 117.3
2411 Female, age 72, unknown 116.3
2666 Male, age 74, left hemisphere 111.8
2828 Female, age 72, unknown 109.4
2219 Male, age 76, both hemispheres 109.3
2019 Male, age 18, unknown 109.0
1830 Male, age 51, unknown 107.6
1870 Female, age 42, unknown 99.1
1827 Male, age 72, unknown 96.8
Dorsal raphe nucleus
nTPM: 101.1
2750 Male, age 76, both hemispheres 111.9
1828 Male, age 53, unknown 109.3
2047 Male, age 72, unknown 99.4
2298 Female, age 72, unknown 95.1
2016 Female, age 72, unknown 90.1
Inferior colliculus
nTPM: 94.3
2849 Male, age 72, unknown 105.2
1848 Female, age 42, unknown 94.9
1890 Male, age 53, unknown 93.4
2097 Female, age 72, unknown 83.7
Median raphe nucleus
nTPM: 117.1
2220 Male, age 76, midline 117.1
Periaquaductal grey, anterior
nTPM: 109.6
2502 Female, age 75, unknown 113.9
1947 Male, age 18, unknown 111.0
1795 Male, age 51, unknown 103.8
Periaquaductal grey, dorsal
nTPM: 91.7
2464 Female, age 72, unknown 98.7
2850 Male, age 76, both hemispheres 96.4
1831 Male, age 72, unknown 87.9
1840 Male, age 53, unknown 83.8
Periaquaductal grey, lateral
nTPM: 98.1
2272 Male, age 74, both hemispheres 105.9
2140 Male, age 76, both hemispheres 102.2
2053 Male, age 18, unknown 86.2
Pretectal area
nTPM: 100.3
1815 Male, age 53, unknown 109.9
2007 Male, age 72, unknown 108.7
1817 Female, age 42, unknown 107.9
2667 Female, age 75, unknown 102.1
2316 Male, age 76, right hemisphere 101.2
1816 Male, age 51, unknown 99.0
2825 Male, age 18, unknown 98.9
2224 Female, age 72, unknown 96.9
1944 Female, age 72, unknown 96.1
2273 Male, age 74, both hemispheres 91.2
2407 Male, age 75, both hemispheres 90.8
Red nucleus
nTPM: 113.4
2769 Male, age 72, unknown 121.6
2584 Male, age 75, left hemisphere 120.5
2227 Male, age 72, unknown 120.4
2588 Male, age 74, left hemisphere 119.5
1904 Male, age 53, unknown 115.6
2785 Male, age 18, unknown 115.3
1865 Male, age 51, unknown 112.5
2503 Female, age 72, unknown 110.0
1954 Female, age 42, unknown 109.8
2823 Male, age 76, right hemisphere 109.6
2725 Female, age 75, unknown 105.1
1821 Female, age 72, unknown 101.5
Substantia nigra
nTPM: 105.1
1916 Female, age 42, unknown 129.8
1851 Male, age 51, unknown 119.3
2665 Male, age 74, both hemispheres 111.8
2699 Male, age 18, unknown 110.9
2583 Male, age 75, right hemisphere 108.1
2590 Female, age 75, unknown 100.0
1889 Female, age 72, unknown 98.5
1941 Male, age 53, unknown 94.0
2409 Female, age 72, unknown 89.5
2241 Male, age 72, unknown 89.3
Superior colliculus
nTPM: 101.0
2664 Male, age 75, both hemispheres 112.0
1913 Female, age 42, unknown 108.0
2261 Male, age 18, unknown 107.0
2668 Female, age 75, unknown 106.7
1839 Male, age 51, unknown 103.9
1995 Male, age 72, unknown 102.4
2087 Female, age 72, unknown 99.8
1796 Male, age 53, unknown 98.5
1895 Male, age 76, right hemisphere 86.5
2587 Male, age 74, left hemisphere 85.2
Ventral tegmental area
nTPM: 110.9
2410 Female, age 72, unknown 134.3
2218 Male, age 76, both hemispheres 112.8
2021 Male, age 53, unknown 107.1
2223 Female, age 72, unknown 105.5
1942 Male, age 51, unknown 103.5
1915 Female, age 42, unknown 102.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 123.9
Min nTPM: 34.8
Std nTPM: 16.9
Median nTPM: 73.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 123.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 120.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 110.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 110.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 110.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 107.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 103.2
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 103.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 102.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 101.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 97.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.8
FF:10158-103A5 76 years, female 147.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.0
Samples: 4

Max nTPM: 69.7
Min nTPM: 51.1
Sample A Female 69.7
Sample B Female 51.1
Sample C Male 68.2
Sample D Male 55.1
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 63.1
Min nTPM: 49.5
Sample A Female 63.1
Sample B Female 49.5
Sample C Male 61.4
Sample D Male 51.5
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 53.5
Min nTPM: 44.9
Sample B Female 44.9
Sample C Male 53.5
Sample D Male 45.1
Superior colliculi
nTPM: 59.4
Samples: 4

Max nTPM: 63.1
Min nTPM: 57.5
Sample A Female 63.1
Sample B Female 58.5
Sample C Male 58.5
Sample D Male 57.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 38.0
Min nTPM: 34.2
Sample A Male 38.0
Sample B Male 34.3
Sample C Female 34.2
Sample D Female 37.0

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