MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.3 nTPM
HPA Brain:250.2 nTPM
GTEx:81.3 nTPM
FANTOM5:112.8 Scaled Tags Per Million
Pig:71.3 nTPM
Mouse:22.4 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 250.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.9
2586 Male, age 75, left hemisphere 455.0
2828 Female, age 72, unknown 293.4
2666 Male, age 74, left hemisphere 249.7
1827 Male, age 72, unknown 209.3
1833 Male, age 53, unknown 180.4
1870 Female, age 42, unknown 170.5
1830 Male, age 51, unknown 153.6
2411 Female, age 72, unknown 145.4
2019 Male, age 18, unknown 106.0
2219 Male, age 76, both hemispheres 105.7
Dorsal raphe nucleus
nTPM: 210.4
2047 Male, age 72, unknown 260.7
1828 Male, age 53, unknown 245.3
2016 Female, age 72, unknown 241.4
2298 Female, age 72, unknown 192.5
2750 Male, age 76, both hemispheres 112.0
Inferior colliculus
nTPM: 209.1
2849 Male, age 72, unknown 251.2
1848 Female, age 42, unknown 223.2
1890 Male, age 53, unknown 192.3
2097 Female, age 72, unknown 169.6
Median raphe nucleus
nTPM: 108.3
2220 Male, age 76, midline 108.3
Periaquaductal grey, anterior
nTPM: 247.1
1795 Male, age 51, unknown 265.1
1947 Male, age 18, unknown 242.4
2502 Female, age 75, unknown 233.6
Periaquaductal grey, dorsal
nTPM: 235.9
2850 Male, age 76, both hemispheres 271.4
1840 Male, age 53, unknown 269.2
2464 Female, age 72, unknown 204.3
1831 Male, age 72, unknown 198.8
Periaquaductal grey, lateral
nTPM: 250.2
2140 Male, age 76, both hemispheres 289.9
2053 Male, age 18, unknown 282.0
2272 Male, age 74, both hemispheres 178.7
Pretectal area
nTPM: 194.2
2825 Male, age 18, unknown 241.7
1816 Male, age 51, unknown 222.0
1944 Female, age 72, unknown 211.4
2667 Female, age 75, unknown 195.8
2407 Male, age 75, both hemispheres 194.9
1817 Female, age 42, unknown 192.3
2316 Male, age 76, right hemisphere 181.2
1815 Male, age 53, unknown 179.2
2273 Male, age 74, both hemispheres 174.6
2007 Male, age 72, unknown 171.6
2224 Female, age 72, unknown 171.1
Red nucleus
nTPM: 178.4
2725 Female, age 75, unknown 234.4
2584 Male, age 75, left hemisphere 214.0
1954 Female, age 42, unknown 211.9
2588 Male, age 74, left hemisphere 185.3
2769 Male, age 72, unknown 184.7
2503 Female, age 72, unknown 178.8
2227 Male, age 72, unknown 175.8
2823 Male, age 76, right hemisphere 173.5
1904 Male, age 53, unknown 159.4
1865 Male, age 51, unknown 153.1
1821 Female, age 72, unknown 143.2
2785 Male, age 18, unknown 126.3
Substantia nigra
nTPM: 166.8
2699 Male, age 18, unknown 230.5
2583 Male, age 75, right hemisphere 208.3
1916 Female, age 42, unknown 182.9
1889 Female, age 72, unknown 177.6
2409 Female, age 72, unknown 163.2
2590 Female, age 75, unknown 154.0
2665 Male, age 74, both hemispheres 150.9
1851 Male, age 51, unknown 140.8
1941 Male, age 53, unknown 131.3
2241 Male, age 72, unknown 129.0
Superior colliculus
nTPM: 201.8
2664 Male, age 75, both hemispheres 372.8
2261 Male, age 18, unknown 239.6
1796 Male, age 53, unknown 214.3
2087 Female, age 72, unknown 194.5
1839 Male, age 51, unknown 188.5
1995 Male, age 72, unknown 177.3
2587 Male, age 74, left hemisphere 167.9
2668 Female, age 75, unknown 161.8
1913 Female, age 42, unknown 158.0
1895 Male, age 76, right hemisphere 143.7
Ventral tegmental area
nTPM: 156.7
1942 Male, age 51, unknown 209.3
2021 Male, age 53, unknown 164.7
2218 Male, age 76, both hemispheres 156.9
2410 Female, age 72, unknown 153.4
1915 Female, age 42, unknown 152.9
2223 Female, age 72, unknown 103.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.3
Samples: 139

Max nTPM: 318.2
Min nTPM: 8.1
Std nTPM: 57.7
Median nTPM: 69.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 318.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 310.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 268.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 260.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 233.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 221.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 197.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 170.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 166.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 157.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 157.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.8
FF:10158-103A5 76 years, female 112.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.5
Samples: 4

Max nTPM: 83.8
Min nTPM: 49.4
Sample A Female 78.1
Sample B Female 50.6
Sample C Male 83.8
Sample D Male 49.4
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 88.9
Min nTPM: 50.9
Sample A Female 88.9
Sample B Female 50.9
Sample C Male 82.0
Sample D Male 63.3
Periaqueductal gray
nTPM: 56.7
Samples: 3

Max nTPM: 64.0
Min nTPM: 52.1
Sample B Female 53.9
Sample C Male 64.0
Sample D Male 52.1
Superior colliculi
nTPM: 59.5
Samples: 4

Max nTPM: 72.5
Min nTPM: 44.0
Sample A Female 72.5
Sample B Female 44.0
Sample C Male 66.8
Sample D Male 54.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.0
Min nTPM: 20.1
Sample A Male 26.0
Sample B Male 21.5
Sample C Female 20.1
Sample D Female 22.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68160845 Antisense, RP_041122_01_B06, Mouse strain C57BL/6J (56 days, male) 5.2

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