MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA Brain:26.1 nTPM
GTEx:13.5 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:12.6 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
2586 Male, age 75, left hemisphere 32.3
2828 Female, age 72, unknown 29.0
2666 Male, age 74, left hemisphere 24.5
1827 Male, age 72, unknown 24.3
2219 Male, age 76, both hemispheres 21.7
2411 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 20.5
1870 Female, age 42, unknown 20.1
2019 Male, age 18, unknown 19.9
1833 Male, age 53, unknown 19.5
Dorsal raphe nucleus
nTPM: 20.2
1828 Male, age 53, unknown 22.7
2016 Female, age 72, unknown 21.4
2298 Female, age 72, unknown 20.1
2047 Male, age 72, unknown 18.5
2750 Male, age 76, both hemispheres 18.1
Inferior colliculus
nTPM: 18.6
2849 Male, age 72, unknown 20.1
1848 Female, age 42, unknown 19.9
2097 Female, age 72, unknown 19.3
1890 Male, age 53, unknown 15.2
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 23.7
2502 Female, age 75, unknown 26.1
1947 Male, age 18, unknown 23.1
1795 Male, age 51, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 23.7
1840 Male, age 53, unknown 26.2
2850 Male, age 76, both hemispheres 26.2
1831 Male, age 72, unknown 21.7
2464 Female, age 72, unknown 20.8
Periaquaductal grey, lateral
nTPM: 20.8
2053 Male, age 18, unknown 23.2
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 20.4
2667 Female, age 75, unknown 24.1
1815 Male, age 53, unknown 22.6
1944 Female, age 72, unknown 21.6
1816 Male, age 51, unknown 21.2
2407 Male, age 75, both hemispheres 21.0
2224 Female, age 72, unknown 20.9
2825 Male, age 18, unknown 19.7
1817 Female, age 42, unknown 19.3
2316 Male, age 76, right hemisphere 19.2
2007 Male, age 72, unknown 17.5
2273 Male, age 74, both hemispheres 16.8
Red nucleus
nTPM: 19.4
2584 Male, age 75, left hemisphere 22.5
2227 Male, age 72, unknown 21.4
2725 Female, age 75, unknown 21.2
1865 Male, age 51, unknown 21.0
2588 Male, age 74, left hemisphere 21.0
1821 Female, age 72, unknown 20.7
2503 Female, age 72, unknown 20.3
2785 Male, age 18, unknown 20.1
2769 Male, age 72, unknown 18.0
1954 Female, age 42, unknown 16.3
1904 Male, age 53, unknown 16.0
2823 Male, age 76, right hemisphere 14.7
Substantia nigra
nTPM: 26.1
1916 Female, age 42, unknown 32.3
2699 Male, age 18, unknown 30.4
2409 Female, age 72, unknown 30.1
1851 Male, age 51, unknown 28.8
1941 Male, age 53, unknown 28.8
2241 Male, age 72, unknown 27.1
2665 Male, age 74, both hemispheres 25.2
2583 Male, age 75, right hemisphere 22.2
1889 Female, age 72, unknown 18.3
2590 Female, age 75, unknown 17.9
Superior colliculus
nTPM: 20.5
2664 Male, age 75, both hemispheres 28.2
1995 Male, age 72, unknown 22.1
1796 Male, age 53, unknown 21.8
2087 Female, age 72, unknown 21.8
2668 Female, age 75, unknown 20.2
1913 Female, age 42, unknown 19.2
2587 Male, age 74, left hemisphere 19.2
1839 Male, age 51, unknown 17.8
2261 Male, age 18, unknown 17.7
1895 Male, age 76, right hemisphere 17.1
Ventral tegmental area
nTPM: 24.2
2410 Female, age 72, unknown 27.6
1915 Female, age 42, unknown 25.9
1942 Male, age 51, unknown 25.8
2021 Male, age 53, unknown 24.5
2218 Male, age 76, both hemispheres 21.5
2223 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.5
Samples: 139

Max nTPM: 46.8
Min nTPM: 3.2
Std nTPM: 5.5
Median nTPM: 12.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 25.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 24.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 24.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 23.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 23.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 16.2
Sample A Female 17.7
Sample B Female 17.6
Sample C Male 16.2
Sample D Male 19.0
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 22.6
Min nTPM: 17.4
Sample A Female 22.6
Sample B Female 20.1
Sample C Male 17.4
Sample D Male 17.6
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 17.7
Min nTPM: 15.9
Sample B Female 17.7
Sample C Male 17.0
Sample D Male 15.9
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 19.4
Min nTPM: 19.0
Sample A Female 19.2
Sample B Female 19.0
Sample C Male 19.4
Sample D Male 19.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.9
Sample A Male 13.4
Sample B Male 12.1
Sample C Female 11.9
Sample D Female 13.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68546155 Antisense, RP_050120_02_A12, Mouse strain C57BL/6J (56 days, male) 0.9

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