MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:25.1 nTPM
GTEx:7.6 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Mouse:22.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2586 Male, age 75, left hemisphere 23.1
1827 Male, age 72, unknown 16.1
2828 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 14.4
1833 Male, age 53, unknown 13.9
2411 Female, age 72, unknown 11.1
2019 Male, age 18, unknown 11.0
2666 Male, age 74, left hemisphere 10.3
1830 Male, age 51, unknown 10.2
2219 Male, age 76, both hemispheres 6.9
Dorsal raphe nucleus
nTPM: 15.5
1828 Male, age 53, unknown 17.2
2016 Female, age 72, unknown 17.2
2047 Male, age 72, unknown 17.0
2298 Female, age 72, unknown 15.9
2750 Male, age 76, both hemispheres 10.4
Inferior colliculus
nTPM: 25.1
2849 Male, age 72, unknown 28.2
1848 Female, age 42, unknown 24.6
1890 Male, age 53, unknown 24.2
2097 Female, age 72, unknown 23.3
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Periaquaductal grey, anterior
nTPM: 11.8
2502 Female, age 75, unknown 16.2
1795 Male, age 51, unknown 13.3
1947 Male, age 18, unknown 6.0
Periaquaductal grey, dorsal
nTPM: 19.4
1840 Male, age 53, unknown 22.3
1831 Male, age 72, unknown 21.4
2850 Male, age 76, both hemispheres 19.0
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 21.9
2053 Male, age 18, unknown 25.3
2140 Male, age 76, both hemispheres 23.7
2272 Male, age 74, both hemispheres 16.6
Pretectal area
nTPM: 16.9
1944 Female, age 72, unknown 24.2
2273 Male, age 74, both hemispheres 23.3
2407 Male, age 75, both hemispheres 23.3
2316 Male, age 76, right hemisphere 18.7
2224 Female, age 72, unknown 17.8
1816 Male, age 51, unknown 17.4
2825 Male, age 18, unknown 16.0
2667 Female, age 75, unknown 14.3
1815 Male, age 53, unknown 10.4
1817 Female, age 42, unknown 10.2
2007 Male, age 72, unknown 10.1
Red nucleus
nTPM: 11.7
2584 Male, age 75, left hemisphere 20.2
2725 Female, age 75, unknown 14.1
2588 Male, age 74, left hemisphere 13.1
2785 Male, age 18, unknown 13.0
2227 Male, age 72, unknown 12.0
2769 Male, age 72, unknown 11.6
2503 Female, age 72, unknown 10.7
1865 Male, age 51, unknown 10.3
1821 Female, age 72, unknown 10.1
2823 Male, age 76, right hemisphere 9.7
1904 Male, age 53, unknown 8.1
1954 Female, age 42, unknown 6.8
Substantia nigra
nTPM: 15.6
2583 Male, age 75, right hemisphere 22.4
2665 Male, age 74, both hemispheres 21.4
2409 Female, age 72, unknown 17.7
2590 Female, age 75, unknown 17.6
1851 Male, age 51, unknown 15.6
2699 Male, age 18, unknown 14.5
2241 Male, age 72, unknown 13.6
1889 Female, age 72, unknown 11.8
1916 Female, age 42, unknown 11.0
1941 Male, age 53, unknown 10.2
Superior colliculus
nTPM: 18.2
2261 Male, age 18, unknown 27.2
2664 Male, age 75, both hemispheres 26.0
2587 Male, age 74, left hemisphere 21.4
1796 Male, age 53, unknown 19.0
1839 Male, age 51, unknown 18.1
2087 Female, age 72, unknown 17.2
1895 Male, age 76, right hemisphere 16.5
1995 Male, age 72, unknown 15.7
1913 Female, age 42, unknown 12.1
2668 Female, age 75, unknown 9.1
Ventral tegmental area
nTPM: 17.3
2021 Male, age 53, unknown 32.7
1915 Female, age 42, unknown 18.5
1942 Male, age 51, unknown 15.6
2410 Female, age 72, unknown 12.6
2223 Female, age 72, unknown 12.5
2218 Male, age 76, both hemispheres 11.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 25.1
Min nTPM: 0.8
Std nTPM: 4.4
Median nTPM: 7.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 25.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 23.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 23.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 20.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 15.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 15.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 14.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.8
Sample A Male 23.0
Sample B Male 22.4
Sample C Female 24.3
Sample D Female 21.8

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