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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.1
nTPM
Monaco:
10.3
nTPM
Schmiedel:
10.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
19.1
HPA sample
nTPM
gdT-cell nTPM: 14.3
Samples: 6
Max nTPM: 16.6
Min nTPM: 12.4
P10809_1007
12.4
P10809_1022
14.9
P10809_1041
15.0
P10809_1060
16.6
P10809_1077
13.9
P10809_1098
13.1
MAIT T-cell nTPM: 15.3
Samples: 6
Max nTPM: 20.6
Min nTPM: 7.8
P10809_1006
7.8
P10809_1024
16.8
P10809_1043
20.6
P10809_1062
14.9
P10809_1083
18.0
P10809_1097
13.7
Memory CD4 T-cell nTPM: 16.3
Samples: 6
Max nTPM: 21.4
Min nTPM: 9.4
P10809_1014
12.8
P10809_1026
9.4
P10809_1045
14.9
P10809_1064
18.7
P10809_1086
20.3
P10809_1113
21.4
Memory CD8 T-cell nTPM: 17.4
Samples: 5
Max nTPM: 23.5
Min nTPM: 11.5
P10809_1012
11.5
P10809_1027
17.3
P10809_1046
19.2
P10809_1065
23.5
P10809_1111
15.3
Naive CD4 T-cell nTPM: 18.6
Samples: 6
Max nTPM: 24.2
Min nTPM: 13.0
P10809_1015
13.0
P10809_1030
24.2
P10809_1049
18.6
P10809_1068
18.8
P10809_1085
21.9
P10809_1112
15.3
Naive CD8 T-cell nTPM: 18.2
Samples: 6
Max nTPM: 20.4
Min nTPM: 15.3
P10809_1016
16.9
P10809_1031
15.3
P10809_1050
18.4
P10809_1069
19.1
P10809_1087
20.4
P10809_1110
19.1
T-reg nTPM: 19.1
Samples: 6
Max nTPM: 27.0
Min nTPM: 14.1
P10809_1018
14.1
P10809_1037
20.9
P10809_1056
16.7
P10809_1075
19.1
P10809_1094
27.0
P10809_1106
16.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
10.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 7.7
Samples: 4
Max nTPM: 8.4
Min nTPM: 6.9
RHH5202_R3573
7.6
RHH5230_R3602
8.4
RHH5259_R3631
8.0
RHH5288_R3660
6.9
Effector memory CD8 T-cell nTPM: 5.9
Samples: 4
Max nTPM: 9.5
Min nTPM: 2.3
RHH5203_R3574
3.3
RHH5231_R3603
9.5
RHH5260_R3632
8.5
RHH5289_R3661
2.3
MAIT T-cell nTPM: 6.5
Samples: 4
Max nTPM: 10.6
Min nTPM: 3.0
RHH5233_R3605
4.4
RHH5205_R3576
10.6
RHH5262_R3634
7.8
RHH5297_R3663
3.0
Memory CD4 T-cell TFH nTPM: 7.0
Samples: 4
Max nTPM: 10.4
Min nTPM: 2.4
RHH5300_R3666
2.4
RHH5236_R3608
10.4
RHH5265_R3637
9.9
RHH5208_R3579
5.4
Memory CD4 T-cell Th1 nTPM: 5.9
Samples: 4
Max nTPM: 11.9
Min nTPM: 3.4
RHH5210_R3581
3.7
RHH5302_R3668
11.9
RHH5238_R3610
4.7
RHH5267_R3639
3.4
Memory CD4 T-cell Th1/Th17 nTPM: 6.1
Samples: 4
Max nTPM: 9.3
Min nTPM: 2.5
RHH5303_R3669
4.8
RHH5211_R3582
2.5
RHH5239_R3611
9.3
RHH5268_R3640
7.6
Memory CD4 T-cell Th17 nTPM: 4.7
Samples: 4
Max nTPM: 8.1
Min nTPM: 1.4
RHH5304_R3670
3.5
RHH5212_R3583
8.1
RHH5240_R3612
1.4
RHH5269_R3641
5.9
Memory CD4 T-cell Th2 nTPM: 5.9
Samples: 4
Max nTPM: 9.7
Min nTPM: 3.2
RHH5305_R3671
9.7
RHH5213_R3584
3.2
RHH5241_R3613
6.7
RHH5270_R3642
4.1
Naive CD4 T-cell nTPM: 10.3
Samples: 4
Max nTPM: 12.5
Min nTPM: 8.0
RHH5306_R3672
9.5
RHH5214_R3585
8.0
RHH5242_R3614
11.2
RHH5271_R3643
12.5
Naive CD8 T-cell nTPM: 8.4
Samples: 4
Max nTPM: 10.2
Min nTPM: 6.5
RHH5201_R3572
8.8
RHH5229_R3601
6.5
RHH5258_R3630
8.2
RHH5287_R3659
10.2
Non-Vd2 gdTCR nTPM: 6.6
Samples: 4
Max nTPM: 9.4
Min nTPM: 3.7
RHH5235_R3607
3.7
RHH5264_R3636
9.4
RHH5207_R3578
6.8
RHH5299_R3665
6.3
T-reg nTPM: 6.4
Samples: 4
Max nTPM: 9.2
Min nTPM: 3.7
RHH5301_R3667
7.1
RHH5237_R3609
5.7
RHH5266_R3638
9.2
RHH5209_R3580
3.7
Terminal effector memory CD4 T-cell nTPM: 9.9
Samples: 2
Max nTPM: 13.0
Min nTPM: 6.8
RHH5243_R3615
13.0
RHH5272_R3644
6.8
Terminal effector memory CD8 T-cell nTPM: 7.9
Samples: 4
Max nTPM: 9.7
Min nTPM: 6.6
RHH5232_R3604
6.6
RHH5204_R3575
7.5
RHH5261_R3633
7.8
RHH5296_R3662
9.7
Vd2 gdTCR nTPM: 8.4
Samples: 4
Max nTPM: 10.9
Min nTPM: 5.5
RHH5234_R3606
9.9
RHH5206_R3577
10.9
RHH5263_R3635
7.4
RHH5298_R3664
5.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
