MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.6 nTPM
HPA Brain:124.0 nTPM
GTEx:100.6 nTPM
FANTOM5:18.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 124.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.1
2586 Male, age 75, left hemisphere 127.1
2666 Male, age 74, left hemisphere 122.0
2019 Male, age 18, unknown 109.8
2411 Female, age 72, unknown 97.7
2219 Male, age 76, both hemispheres 86.6
1870 Female, age 42, unknown 85.0
1833 Male, age 53, unknown 83.3
1830 Male, age 51, unknown 81.9
2828 Female, age 72, unknown 80.2
1827 Male, age 72, unknown 77.5
Dorsal raphe nucleus
nTPM: 116.7
2047 Male, age 72, unknown 141.8
1828 Male, age 53, unknown 134.5
2750 Male, age 76, both hemispheres 112.8
2298 Female, age 72, unknown 106.9
2016 Female, age 72, unknown 87.3
Inferior colliculus
nTPM: 98.4
1890 Male, age 53, unknown 111.2
2097 Female, age 72, unknown 104.2
1848 Female, age 42, unknown 89.2
2849 Male, age 72, unknown 89.0
Median raphe nucleus
nTPM: 124.0
2220 Male, age 76, midline 124.0
Periaquaductal grey, anterior
nTPM: 112.3
1947 Male, age 18, unknown 129.5
2502 Female, age 75, unknown 116.1
1795 Male, age 51, unknown 91.2
Periaquaductal grey, dorsal
nTPM: 87.6
2850 Male, age 76, both hemispheres 100.1
2464 Female, age 72, unknown 84.3
1840 Male, age 53, unknown 84.2
1831 Male, age 72, unknown 81.9
Periaquaductal grey, lateral
nTPM: 82.6
2140 Male, age 76, both hemispheres 89.5
2272 Male, age 74, both hemispheres 88.4
2053 Male, age 18, unknown 69.8
Pretectal area
nTPM: 91.3
1817 Female, age 42, unknown 115.4
1816 Male, age 51, unknown 112.4
1944 Female, age 72, unknown 110.4
2007 Male, age 72, unknown 107.7
1815 Male, age 53, unknown 85.9
2273 Male, age 74, both hemispheres 85.8
2667 Female, age 75, unknown 85.2
2224 Female, age 72, unknown 79.6
2407 Male, age 75, both hemispheres 78.0
2316 Male, age 76, right hemisphere 75.0
2825 Male, age 18, unknown 69.4
Red nucleus
nTPM: 103.9
1821 Female, age 72, unknown 125.2
2785 Male, age 18, unknown 115.6
1865 Male, age 51, unknown 109.3
2227 Male, age 72, unknown 108.6
2584 Male, age 75, left hemisphere 108.0
2769 Male, age 72, unknown 106.8
2503 Female, age 72, unknown 101.6
2588 Male, age 74, left hemisphere 100.8
1954 Female, age 42, unknown 99.4
1904 Male, age 53, unknown 97.7
2725 Female, age 75, unknown 90.7
2823 Male, age 76, right hemisphere 83.8
Substantia nigra
nTPM: 112.7
1916 Female, age 42, unknown 138.1
1941 Male, age 53, unknown 125.6
1851 Male, age 51, unknown 123.6
2665 Male, age 74, both hemispheres 119.3
2241 Male, age 72, unknown 106.7
1889 Female, age 72, unknown 106.1
2583 Male, age 75, right hemisphere 106.1
2590 Female, age 75, unknown 104.5
2699 Male, age 18, unknown 102.7
2409 Female, age 72, unknown 93.8
Superior colliculus
nTPM: 89.3
2668 Female, age 75, unknown 109.6
2664 Male, age 75, both hemispheres 98.7
2261 Male, age 18, unknown 96.6
2087 Female, age 72, unknown 94.1
2587 Male, age 74, left hemisphere 87.4
1895 Male, age 76, right hemisphere 83.2
1796 Male, age 53, unknown 83.0
1995 Male, age 72, unknown 82.4
1839 Male, age 51, unknown 80.0
1913 Female, age 42, unknown 77.9
Ventral tegmental area
nTPM: 106.6
1942 Male, age 51, unknown 112.9
2410 Female, age 72, unknown 112.2
2218 Male, age 76, both hemispheres 111.6
1915 Female, age 42, unknown 106.7
2021 Male, age 53, unknown 98.7
2223 Female, age 72, unknown 97.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 139

Max nTPM: 193.8
Min nTPM: 35.3
Std nTPM: 25.9
Median nTPM: 96.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 193.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 183.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 174.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 156.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 155.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 148.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 144.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 143.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 141.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 138.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

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