MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:51.7 nTPM
GTEx:39.5 nTPM
FANTOM5:54.7 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:9.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
2019 Male, age 18, unknown 44.9
1870 Female, age 42, unknown 41.7
2666 Male, age 74, left hemisphere 40.7
2219 Male, age 76, both hemispheres 40.2
2586 Male, age 75, left hemisphere 40.2
1830 Male, age 51, unknown 38.9
1833 Male, age 53, unknown 38.4
1827 Male, age 72, unknown 36.3
2411 Female, age 72, unknown 33.1
2828 Female, age 72, unknown 32.0
Dorsal raphe nucleus
nTPM: 44.7
2016 Female, age 72, unknown 54.9
1828 Male, age 53, unknown 47.1
2298 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 37.8
2750 Male, age 76, both hemispheres 37.6
Inferior colliculus
nTPM: 43.7
2849 Male, age 72, unknown 49.3
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 42.8
1848 Female, age 42, unknown 39.5
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 42.2
2502 Female, age 75, unknown 47.4
1947 Male, age 18, unknown 40.5
1795 Male, age 51, unknown 38.7
Periaquaductal grey, dorsal
nTPM: 51.7
1840 Male, age 53, unknown 56.2
2850 Male, age 76, both hemispheres 53.9
1831 Male, age 72, unknown 52.1
2464 Female, age 72, unknown 44.7
Periaquaductal grey, lateral
nTPM: 42.9
2272 Male, age 74, both hemispheres 43.6
2140 Male, age 76, both hemispheres 43.1
2053 Male, age 18, unknown 41.9
Pretectal area
nTPM: 42.7
2224 Female, age 72, unknown 48.3
2316 Male, age 76, right hemisphere 47.7
2273 Male, age 74, both hemispheres 46.5
1816 Male, age 51, unknown 45.6
1815 Male, age 53, unknown 42.7
2407 Male, age 75, both hemispheres 42.1
1944 Female, age 72, unknown 40.3
1817 Female, age 42, unknown 40.0
2007 Male, age 72, unknown 39.3
2825 Male, age 18, unknown 39.3
2667 Female, age 75, unknown 37.6
Red nucleus
nTPM: 41.0
2503 Female, age 72, unknown 46.6
1954 Female, age 42, unknown 45.8
1821 Female, age 72, unknown 44.3
2588 Male, age 74, left hemisphere 43.5
2725 Female, age 75, unknown 41.4
2823 Male, age 76, right hemisphere 41.1
2785 Male, age 18, unknown 41.0
1865 Male, age 51, unknown 40.1
2769 Male, age 72, unknown 38.9
1904 Male, age 53, unknown 37.6
2227 Male, age 72, unknown 36.4
2584 Male, age 75, left hemisphere 34.9
Substantia nigra
nTPM: 39.3
2409 Female, age 72, unknown 51.0
2241 Male, age 72, unknown 45.8
2699 Male, age 18, unknown 42.0
2665 Male, age 74, both hemispheres 40.2
2590 Female, age 75, unknown 38.8
1889 Female, age 72, unknown 38.3
2583 Male, age 75, right hemisphere 38.0
1941 Male, age 53, unknown 35.1
1851 Male, age 51, unknown 33.6
1916 Female, age 42, unknown 30.4
Superior colliculus
nTPM: 42.8
1995 Male, age 72, unknown 50.2
1913 Female, age 42, unknown 45.9
2587 Male, age 74, left hemisphere 44.9
2664 Male, age 75, both hemispheres 44.5
1839 Male, age 51, unknown 43.2
2087 Female, age 72, unknown 42.6
2668 Female, age 75, unknown 42.4
2261 Male, age 18, unknown 38.8
1796 Male, age 53, unknown 38.0
1895 Male, age 76, right hemisphere 37.9
Ventral tegmental area
nTPM: 40.1
2021 Male, age 53, unknown 47.0
1942 Male, age 51, unknown 46.3
2223 Female, age 72, unknown 40.3
1915 Female, age 42, unknown 36.8
2218 Male, age 76, both hemispheres 36.6
2410 Female, age 72, unknown 33.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 77.5
Min nTPM: 17.7
Std nTPM: 11.3
Median nTPM: 37.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 77.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 66.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 65.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 64.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 62.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 59.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 59.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 59.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 57.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 56.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.7
FF:10158-103A5 76 years, female 54.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 16.6
Sample A Female 19.0
Sample B Female 17.3
Sample C Male 16.6
Sample D Male 17.8
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.3
Sample A Female 20.2
Sample B Female 19.4
Sample C Male 19.2
Sample D Male 17.3
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.7
Min nTPM: 15.8
Sample B Female 17.6
Sample C Male 15.8
Sample D Male 18.7
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 15.7
Sample A Female 19.0
Sample B Female 15.7
Sample C Male 20.8
Sample D Male 19.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.8
Sample A Male 9.0
Sample B Male 10.0
Sample C Female 8.8
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69352840 Antisense, RP_050412_01_C03, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org