MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:117.8 nTPM
GTEx:3.3 nTPM
FANTOM5:139.7 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:24.8 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.7
2586 Male, age 75, left hemisphere 154.9
2666 Male, age 74, left hemisphere 129.7
1827 Male, age 72, unknown 119.6
1870 Female, age 42, unknown 101.9
2019 Male, age 18, unknown 101.7
2411 Female, age 72, unknown 100.2
1830 Male, age 51, unknown 87.6
2828 Female, age 72, unknown 80.4
1833 Male, age 53, unknown 78.9
2219 Male, age 76, both hemispheres 62.1
Dorsal raphe nucleus
nTPM: 102.7
2298 Female, age 72, unknown 125.6
2047 Male, age 72, unknown 113.4
1828 Male, age 53, unknown 98.8
2016 Female, age 72, unknown 89.6
2750 Male, age 76, both hemispheres 86.3
Inferior colliculus
nTPM: 116.0
2097 Female, age 72, unknown 134.5
1848 Female, age 42, unknown 115.1
1890 Male, age 53, unknown 111.7
2849 Male, age 72, unknown 102.7
Median raphe nucleus
nTPM: 93.7
2220 Male, age 76, midline 93.7
Periaquaductal grey, anterior
nTPM: 117.8
1947 Male, age 18, unknown 137.0
2502 Female, age 75, unknown 108.6
1795 Male, age 51, unknown 107.6
Periaquaductal grey, dorsal
nTPM: 94.6
1840 Male, age 53, unknown 118.3
1831 Male, age 72, unknown 102.8
2850 Male, age 76, both hemispheres 85.3
2464 Female, age 72, unknown 72.0
Periaquaductal grey, lateral
nTPM: 87.1
2053 Male, age 18, unknown 102.7
2140 Male, age 76, both hemispheres 91.6
2272 Male, age 74, both hemispheres 67.0
Pretectal area
nTPM: 113.0
1944 Female, age 72, unknown 140.0
1816 Male, age 51, unknown 139.5
1817 Female, age 42, unknown 137.3
2007 Male, age 72, unknown 132.8
1815 Male, age 53, unknown 117.4
2667 Female, age 75, unknown 110.4
2825 Male, age 18, unknown 107.5
2224 Female, age 72, unknown 94.1
2316 Male, age 76, right hemisphere 90.9
2273 Male, age 74, both hemispheres 87.8
2407 Male, age 75, both hemispheres 85.7
Red nucleus
nTPM: 97.5
1821 Female, age 72, unknown 119.9
2588 Male, age 74, left hemisphere 116.8
2584 Male, age 75, left hemisphere 115.6
2725 Female, age 75, unknown 109.9
2503 Female, age 72, unknown 96.6
1954 Female, age 42, unknown 96.5
1865 Male, age 51, unknown 91.1
1904 Male, age 53, unknown 87.0
2785 Male, age 18, unknown 86.9
2227 Male, age 72, unknown 86.1
2769 Male, age 72, unknown 84.9
2823 Male, age 76, right hemisphere 79.0
Substantia nigra
nTPM: 116.5
2665 Male, age 74, both hemispheres 140.4
1941 Male, age 53, unknown 127.5
1889 Female, age 72, unknown 126.5
1916 Female, age 42, unknown 126.2
1851 Male, age 51, unknown 115.7
2583 Male, age 75, right hemisphere 112.5
2241 Male, age 72, unknown 111.0
2590 Female, age 75, unknown 110.0
2409 Female, age 72, unknown 109.9
2699 Male, age 18, unknown 85.2
Superior colliculus
nTPM: 103.1
2664 Male, age 75, both hemispheres 135.0
2087 Female, age 72, unknown 110.3
2261 Male, age 18, unknown 110.0
1796 Male, age 53, unknown 105.9
1895 Male, age 76, right hemisphere 105.5
2668 Female, age 75, unknown 102.3
1839 Male, age 51, unknown 101.0
2587 Male, age 74, left hemisphere 95.6
1995 Male, age 72, unknown 85.3
1913 Female, age 42, unknown 80.1
Ventral tegmental area
nTPM: 101.1
1915 Female, age 42, unknown 119.9
1942 Male, age 51, unknown 104.8
2410 Female, age 72, unknown 104.0
2021 Male, age 53, unknown 96.4
2223 Female, age 72, unknown 95.7
2218 Male, age 76, both hemispheres 85.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.3
Samples: 139

Max nTPM: 7.0
Min nTPM: 1.5
Std nTPM: 1.1
Median nTPM: 2.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 7.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 6.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 6.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 6.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 6.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 5.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 5.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 5.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 5.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.7
FF:10158-103A5 76 years, female 139.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 18.9
Sample A Female 29.6
Sample B Female 18.9
Sample C Male 23.9
Sample D Male 20.0
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 30.5
Min nTPM: 22.7
Sample A Female 30.5
Sample B Female 22.7
Sample C Male 24.4
Sample D Male 26.4
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 25.2
Min nTPM: 22.4
Sample B Female 22.4
Sample C Male 25.2
Sample D Male 23.6
Superior colliculi
nTPM: 25.7
Samples: 4

Max nTPM: 29.6
Min nTPM: 19.7
Sample A Female 29.6
Sample B Female 19.7
Sample C Male 26.7
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 26.4
Min nTPM: 22.8
Sample A Male 24.4
Sample B Male 25.5
Sample C Female 22.8
Sample D Female 26.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
513242 Antisense, RP_040810_01_D10, Mouse strain C57BL/6J (56 days, male) 2.4

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