MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:29.6 nTPM
GTEx:22.4 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:20.7 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2586 Male, age 75, left hemisphere 30.8
2828 Female, age 72, unknown 30.1
2219 Male, age 76, both hemispheres 29.5
2019 Male, age 18, unknown 28.3
1827 Male, age 72, unknown 27.5
1870 Female, age 42, unknown 27.5
2666 Male, age 74, left hemisphere 27.4
1830 Male, age 51, unknown 27.2
1833 Male, age 53, unknown 27.1
2411 Female, age 72, unknown 26.1
Dorsal raphe nucleus
nTPM: 25.3
2750 Male, age 76, both hemispheres 27.5
2298 Female, age 72, unknown 25.5
2047 Male, age 72, unknown 24.9
1828 Male, age 53, unknown 24.7
2016 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 26.5
2849 Male, age 72, unknown 29.5
1848 Female, age 42, unknown 26.3
1890 Male, age 53, unknown 25.6
2097 Female, age 72, unknown 24.4
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Periaquaductal grey, anterior
nTPM: 28.9
2502 Female, age 75, unknown 29.9
1795 Male, age 51, unknown 29.3
1947 Male, age 18, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 26.8
2850 Male, age 76, both hemispheres 29.7
1840 Male, age 53, unknown 26.2
2464 Female, age 72, unknown 25.9
1831 Male, age 72, unknown 25.6
Periaquaductal grey, lateral
nTPM: 29.2
2140 Male, age 76, both hemispheres 30.8
2272 Male, age 74, both hemispheres 30.1
2053 Male, age 18, unknown 26.8
Pretectal area
nTPM: 29.6
2667 Female, age 75, unknown 34.9
2407 Male, age 75, both hemispheres 30.7
1816 Male, age 51, unknown 30.6
2007 Male, age 72, unknown 30.6
2316 Male, age 76, right hemisphere 29.7
1817 Female, age 42, unknown 28.8
2273 Male, age 74, both hemispheres 28.6
1815 Male, age 53, unknown 28.4
1944 Female, age 72, unknown 28.2
2825 Male, age 18, unknown 27.9
2224 Female, age 72, unknown 27.3
Red nucleus
nTPM: 29.4
2769 Male, age 72, unknown 31.0
1865 Male, age 51, unknown 30.7
2823 Male, age 76, right hemisphere 30.6
2227 Male, age 72, unknown 30.5
2785 Male, age 18, unknown 30.4
2588 Male, age 74, left hemisphere 29.7
1904 Male, age 53, unknown 29.6
2503 Female, age 72, unknown 29.4
2584 Male, age 75, left hemisphere 29.3
1954 Female, age 42, unknown 27.5
2725 Female, age 75, unknown 27.4
1821 Female, age 72, unknown 26.3
Substantia nigra
nTPM: 25.1
2665 Male, age 74, both hemispheres 27.7
2699 Male, age 18, unknown 27.0
2583 Male, age 75, right hemisphere 26.5
1916 Female, age 42, unknown 25.8
1889 Female, age 72, unknown 25.6
1941 Male, age 53, unknown 25.6
1851 Male, age 51, unknown 25.3
2590 Female, age 75, unknown 24.9
2409 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 21.0
Superior colliculus
nTPM: 28.0
1796 Male, age 53, unknown 30.9
1913 Female, age 42, unknown 30.3
2261 Male, age 18, unknown 30.0
2087 Female, age 72, unknown 28.8
1995 Male, age 72, unknown 28.5
2664 Male, age 75, both hemispheres 28.4
1895 Male, age 76, right hemisphere 26.2
2587 Male, age 74, left hemisphere 26.2
1839 Male, age 51, unknown 25.8
2668 Female, age 75, unknown 24.6
Ventral tegmental area
nTPM: 25.6
2223 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 26.1
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 25.7
1915 Female, age 42, unknown 24.1
2410 Female, age 72, unknown 23.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 139

Max nTPM: 43.6
Min nTPM: 13.2
Std nTPM: 4.5
Median nTPM: 21.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 33.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 32.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 29.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 29.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 29.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 24.9
Sample A Female 26.3
Sample B Female 24.9
Sample C Male 27.0
Sample D Male 30.8
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 41.4
Min nTPM: 25.1
Sample A Female 41.4
Sample B Female 25.1
Sample C Male 25.5
Sample D Male 25.3
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 27.8
Min nTPM: 25.8
Sample B Female 26.6
Sample C Male 27.8
Sample D Male 25.8
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.5
Sample A Female 30.1
Sample B Female 33.4
Sample C Male 26.5
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.4
Sample A Male 19.6
Sample B Male 18.4
Sample C Female 23.4
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
513249 Antisense, RP_040810_01_E05, Mouse strain C57BL/6J (56 days, male) 1.9

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