HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:25.9 nTPM
HPA Brain:30.4 nTPM
GTEx:25.9 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:23.7 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034972
Glial cells High
Neuronal cells Low

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.4
Sample id Sample description nTPM
Hippocampus
nTPM: 29.3
2529 Female, age 94, left hemisphere 32.8
2148 Female, age 91, left hemisphere 32.7
2621 Female, age 67, right hemisphere 30.5
1855 Male, age 76, left hemisphere 27.5
1911 Female, age 85, right hemisphere 26.9
1898 Male, age 80, left hemisphere 25.4
Dentate gyrus
nTPM: 29.9
2531 Female, age 67, both hemispheres 33.8
2530 Female, age 94, left hemisphere 32.7
2246 Female, age 85, both hemispheres 31.2
2010 Male, age 76, both hemispheres 27.5
2528 Male, age 74, both hemispheres 27.3
1927 Female, age 91, both hemispheres 27.0
Entorhinal gyrus
nTPM: 29.9
2764 Male, age 80, right hemisphere 32.1
2613 Female, age 94, left hemisphere 30.5
2117 Female, age 91, right hemisphere 30.0
1787 Male, age 76, left hemisphere 29.9
2686 Male, age 75, right hemisphere 29.5
1938 Female, age 85, left hemisphere 27.5
Hippocampus, CA1
nTPM: 30.0
2045 Male, age 76, both hemispheres 31.6
2082 Female, age 91, right hemisphere 30.9
2527 Male, age 74, both hemispheres 30.8
2749 Male, age 80, left hemisphere 30.3
1873 Female, age 85, both hemispheres 26.3
Hippocampus, CA2
nTPM: 27.8
2113 Female, age 91, right hemisphere 30.2
2437 Female, age 94, left hemisphere 29.9
1940 Female, age 85, left hemisphere 28.4
2249 Male, age 74, both hemispheres 27.0
1892 Male, age 76, both hemispheres 26.6
1963 Male, age 80, left hemisphere 24.6
Hippocampus, CA3
nTPM: 30.4
2620 Female, age 94, left hemisphere 37.2
2861 Female, age 67, both hemispheres 34.3
2137 Male, age 80, left hemisphere 29.1
1867 Male, age 76, both hemispheres 28.0
1891 Female, age 85, both hemispheres 27.6
2436 Male, age 74, both hemispheres 25.9
Parahippocampal cortex
nTPM: 28.5
2245 Female, age 91, both hemispheres 31.6
2532 Female, age 72, left hemisphere 30.8
2622 Female, age 67, right hemisphere 30.7
2692 Male, age 74, both hemispheres 28.9
2018 Male, age 76, both hemispheres 28.3
1990 Female, age 91, right hemisphere 28.0
2250 Female, age 67, right hemisphere 27.6
2693 Female, age 94, both hemispheres 27.3
1850 Male, age 80, both hemispheres 27.0
1933 Female, age 85, both hemispheres 25.1
Perirhinal gyrus
nTPM: 28.7
1794 Male, age 80, right hemisphere 31.6
2521 Female, age 94, right hemisphere 30.7
2848 Male, age 76, right hemisphere 28.6
1847 Female, age 91, left hemisphere 27.0
1841 Female, age 85, right hemisphere 25.8
Subiculum
nTPM: 29.7
2438 Female, age 94, left hemisphere 32.3
2042 Male, age 76, both hemispheres 30.3
2619 Male, age 74, both hemispheres 30.1
1901 Male, age 80, both hemispheres 29.3
1977 Female, age 85, both hemispheres 28.6
2729 Female, age 91, right hemisphere 27.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.9
Samples: 197

Max nTPM: 44.7
Min nTPM: 14.5
Std nTPM: 4.6
Median nTPM: 25.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 44.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 39.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 38.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 36.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 36.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 35.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 35.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 34.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 33.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 33.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 33.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.1
FF:10153-102I9 76 years, female 43.1
FF:10169-103B7 60 years, female 31.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Subiculum
nTPM: 25.7
Samples: 4

Max nTPM: 32.4
Min nTPM: 22.4
Sample A Female 32.4
Sample B Female 23.8
Sample C Male 24.3
Sample D Male 22.4
Dorsal hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 33.9
Min nTPM: 26.2
Sample A Female 33.9
Sample B Female 29.5
Sample C Male 26.2
Sample D Male 27.4
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.5
Sample A Female 28.8
Sample B Female 23.7
Sample C Male 22.5
Sample D Male 22.9
Ventral hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 33.3
Min nTPM: 23.0
Sample A Female 27.1
Sample B Female 23.0
Sample C Male 33.3
Sample D Male 31.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 22.5
Sample A Male 23.1
Sample B Male 24.8
Sample C Female 24.4
Sample D Female 22.5
Hippocampal formation
nTPM: 23.7
Samples: 4

Max nTPM: 24.1
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 23.4
Sample C Female 24.1
Sample D Female 24.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
513249 Antisense, RP_040810_01_E05, Mouse strain C57BL/6J (56 days, male) 11.8

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