MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA Brain:97.6 nTPM
GTEx:19.1 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:71.7 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.4
2219 Male, age 76, both hemispheres 107.0
1870 Female, age 42, unknown 76.8
1833 Male, age 53, unknown 75.1
2411 Female, age 72, unknown 74.9
1827 Male, age 72, unknown 71.7
2586 Male, age 75, left hemisphere 65.0
1830 Male, age 51, unknown 62.3
2828 Female, age 72, unknown 58.3
2666 Male, age 74, left hemisphere 54.4
2019 Male, age 18, unknown 48.6
Dorsal raphe nucleus
nTPM: 81.6
2298 Female, age 72, unknown 103.2
2750 Male, age 76, both hemispheres 82.5
2047 Male, age 72, unknown 79.9
2016 Female, age 72, unknown 75.1
1828 Male, age 53, unknown 67.5
Inferior colliculus
nTPM: 82.5
2097 Female, age 72, unknown 97.7
1848 Female, age 42, unknown 81.9
2849 Male, age 72, unknown 76.9
1890 Male, age 53, unknown 73.7
Median raphe nucleus
nTPM: 92.1
2220 Male, age 76, midline 92.1
Periaquaductal grey, anterior
nTPM: 83.3
2502 Female, age 75, unknown 87.9
1947 Male, age 18, unknown 81.5
1795 Male, age 51, unknown 80.4
Periaquaductal grey, dorsal
nTPM: 94.2
2850 Male, age 76, both hemispheres 110.2
1840 Male, age 53, unknown 101.1
1831 Male, age 72, unknown 82.8
2464 Female, age 72, unknown 82.5
Periaquaductal grey, lateral
nTPM: 97.6
2140 Male, age 76, both hemispheres 106.0
2272 Male, age 74, both hemispheres 98.8
2053 Male, age 18, unknown 87.9
Pretectal area
nTPM: 75.1
2224 Female, age 72, unknown 102.9
2825 Male, age 18, unknown 92.6
2273 Male, age 74, both hemispheres 81.1
2667 Female, age 75, unknown 76.4
1817 Female, age 42, unknown 73.6
1944 Female, age 72, unknown 73.3
1816 Male, age 51, unknown 71.7
2316 Male, age 76, right hemisphere 70.2
1815 Male, age 53, unknown 69.8
2007 Male, age 72, unknown 62.5
2407 Male, age 75, both hemispheres 52.4
Red nucleus
nTPM: 64.0
2503 Female, age 72, unknown 76.9
1954 Female, age 42, unknown 72.7
2725 Female, age 75, unknown 72.7
1821 Female, age 72, unknown 72.4
2823 Male, age 76, right hemisphere 70.1
2769 Male, age 72, unknown 60.6
2227 Male, age 72, unknown 60.5
1865 Male, age 51, unknown 59.6
2588 Male, age 74, left hemisphere 58.6
1904 Male, age 53, unknown 58.0
2785 Male, age 18, unknown 55.4
2584 Male, age 75, left hemisphere 50.0
Substantia nigra
nTPM: 72.6
2241 Male, age 72, unknown 110.6
1941 Male, age 53, unknown 96.4
2699 Male, age 18, unknown 86.9
2409 Female, age 72, unknown 75.8
1851 Male, age 51, unknown 67.6
1889 Female, age 72, unknown 67.2
2590 Female, age 75, unknown 63.1
2665 Male, age 74, both hemispheres 58.4
2583 Male, age 75, right hemisphere 54.1
1916 Female, age 42, unknown 45.6
Superior colliculus
nTPM: 71.1
1895 Male, age 76, right hemisphere 89.5
2261 Male, age 18, unknown 81.9
1839 Male, age 51, unknown 78.9
2087 Female, age 72, unknown 78.0
1913 Female, age 42, unknown 71.5
1995 Male, age 72, unknown 67.0
1796 Male, age 53, unknown 66.7
2587 Male, age 74, left hemisphere 64.3
2668 Female, age 75, unknown 62.7
2664 Male, age 75, both hemispheres 50.6
Ventral tegmental area
nTPM: 78.3
1942 Male, age 51, unknown 89.4
2410 Female, age 72, unknown 82.8
2021 Male, age 53, unknown 77.3
2218 Male, age 76, both hemispheres 76.0
2223 Female, age 72, unknown 72.6
1915 Female, age 42, unknown 71.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.1
Samples: 139

Max nTPM: 53.3
Min nTPM: 7.5
Std nTPM: 6.0
Median nTPM: 18.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 36.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 32.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 30.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 29.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 28.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.6
Samples: 4

Max nTPM: 47.6
Min nTPM: 32.0
Sample A Female 42.9
Sample B Female 39.7
Sample C Male 47.6
Sample D Male 32.0
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 63.8
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 42.2
Sample C Male 46.2
Sample D Male 63.8
Periaqueductal gray
nTPM: 49.9
Samples: 3

Max nTPM: 53.8
Min nTPM: 47.6
Sample B Female 48.3
Sample C Male 53.8
Sample D Male 47.6
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 50.2
Min nTPM: 34.2
Sample A Female 50.2
Sample B Female 34.2
Sample C Male 37.2
Sample D Male 44.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.7
Samples: 4

Max nTPM: 76.0
Min nTPM: 64.1
Sample A Male 64.1
Sample B Male 73.1
Sample C Female 76.0
Sample D Female 73.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
100144893 Antisense, RP_110421_04_B09, Mouse strain C57BL/6J (56 days, male) 12.8
81654149 Antisense, RP_090303_01_A10, Mouse strain C57BL/6J (56 days, male) 10.8

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