MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:18.4 nTPM
GTEx:24.0 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:69.5 nTPM
Mouse:63.8 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
1827 Male, age 72, unknown 17.8
2219 Male, age 76, both hemispheres 17.6
2019 Male, age 18, unknown 16.6
2586 Male, age 75, left hemisphere 16.0
2411 Female, age 72, unknown 15.4
2666 Male, age 74, left hemisphere 15.1
2828 Female, age 72, unknown 14.6
1833 Male, age 53, unknown 12.7
1870 Female, age 42, unknown 12.7
1830 Male, age 51, unknown 10.2
Dorsal raphe nucleus
nTPM: 16.8
2298 Female, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 18.7
2047 Male, age 72, unknown 15.5
1828 Male, age 53, unknown 13.9
2016 Female, age 72, unknown 13.8
Inferior colliculus
nTPM: 14.1
2097 Female, age 72, unknown 16.9
2849 Male, age 72, unknown 13.6
1890 Male, age 53, unknown 13.5
1848 Female, age 42, unknown 12.5
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 19.4
1795 Male, age 51, unknown 18.7
1947 Male, age 18, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 14.1
1840 Male, age 53, unknown 15.9
2464 Female, age 72, unknown 15.5
2850 Male, age 76, both hemispheres 13.0
1831 Male, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 14.8
2140 Male, age 76, both hemispheres 17.9
2053 Male, age 18, unknown 15.9
2272 Male, age 74, both hemispheres 10.6
Pretectal area
nTPM: 15.6
1816 Male, age 51, unknown 19.0
2407 Male, age 75, both hemispheres 18.8
2007 Male, age 72, unknown 18.7
2316 Male, age 76, right hemisphere 18.7
2224 Female, age 72, unknown 15.2
1815 Male, age 53, unknown 14.9
1817 Female, age 42, unknown 14.1
2825 Male, age 18, unknown 14.1
2667 Female, age 75, unknown 13.4
1944 Female, age 72, unknown 12.2
2273 Male, age 74, both hemispheres 12.0
Red nucleus
nTPM: 12.5
2584 Male, age 75, left hemisphere 17.3
2823 Male, age 76, right hemisphere 15.2
2227 Male, age 72, unknown 13.6
2785 Male, age 18, unknown 13.5
2588 Male, age 74, left hemisphere 13.1
1904 Male, age 53, unknown 12.3
2769 Male, age 72, unknown 12.2
1954 Female, age 42, unknown 11.2
2503 Female, age 72, unknown 11.1
1865 Male, age 51, unknown 10.6
2725 Female, age 75, unknown 10.4
1821 Female, age 72, unknown 9.3
Substantia nigra
nTPM: 17.0
1916 Female, age 42, unknown 25.1
1941 Male, age 53, unknown 21.3
1851 Male, age 51, unknown 19.6
2241 Male, age 72, unknown 18.4
2583 Male, age 75, right hemisphere 17.8
2590 Female, age 75, unknown 16.4
2665 Male, age 74, both hemispheres 16.4
2699 Male, age 18, unknown 14.6
1889 Female, age 72, unknown 12.2
2409 Female, age 72, unknown 8.1
Superior colliculus
nTPM: 14.5
2664 Male, age 75, both hemispheres 19.4
1796 Male, age 53, unknown 18.2
2668 Female, age 75, unknown 18.0
1895 Male, age 76, right hemisphere 15.8
2087 Female, age 72, unknown 14.9
2261 Male, age 18, unknown 13.7
1839 Male, age 51, unknown 12.6
2587 Male, age 74, left hemisphere 11.8
1913 Female, age 42, unknown 10.6
1995 Male, age 72, unknown 10.1
Ventral tegmental area
nTPM: 14.8
1915 Female, age 42, unknown 18.7
1942 Male, age 51, unknown 17.9
2218 Male, age 76, both hemispheres 14.8
2410 Female, age 72, unknown 14.2
2223 Female, age 72, unknown 12.1
2021 Male, age 53, unknown 11.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 52.9
Min nTPM: 10.1
Std nTPM: 7.8
Median nTPM: 22.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 42.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 40.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 37.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 37.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.5
Samples: 4

Max nTPM: 85.9
Min nTPM: 45.6
Sample A Female 85.9
Sample B Female 60.8
Sample C Male 85.8
Sample D Male 45.6
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 97.3
Min nTPM: 56.1
Sample A Female 60.4
Sample B Female 56.1
Sample C Male 97.3
Sample D Male 64.5
Periaqueductal gray
nTPM: 58.9
Samples: 3

Max nTPM: 72.9
Min nTPM: 50.4
Sample B Female 53.5
Sample C Male 72.9
Sample D Male 50.4
Superior colliculi
nTPM: 66.3
Samples: 4

Max nTPM: 71.0
Min nTPM: 61.0
Sample A Female 69.0
Sample B Female 61.0
Sample C Male 71.0
Sample D Male 64.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.8
Samples: 4

Max nTPM: 64.5
Min nTPM: 62.7
Sample A Male 62.7
Sample B Male 63.9
Sample C Female 63.9
Sample D Female 64.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
74819476 Antisense, RP_060315_02_F09, Mouse strain C57BL/6J (56 days, male) 11.1
69838359 Antisense, RP_050301_02_E10, Mouse strain C57BL/6J (56 days, male) 9.9

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