MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.9 nTPM
HPA Brain:100.1 nTPM
GTEx:39.9 nTPM
FANTOM5:138.5 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:2.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.1
1830 Male, age 51, unknown 101.9
2411 Female, age 72, unknown 98.2
1870 Female, age 42, unknown 89.9
2019 Male, age 18, unknown 88.6
1833 Male, age 53, unknown 87.3
2586 Male, age 75, left hemisphere 87.1
2666 Male, age 74, left hemisphere 69.7
2828 Female, age 72, unknown 64.7
2219 Male, age 76, both hemispheres 63.0
1827 Male, age 72, unknown 61.1
Dorsal raphe nucleus
nTPM: 54.9
2750 Male, age 76, both hemispheres 86.1
1828 Male, age 53, unknown 57.8
2016 Female, age 72, unknown 55.6
2047 Male, age 72, unknown 43.5
2298 Female, age 72, unknown 31.3
Inferior colliculus
nTPM: 49.0
1890 Male, age 53, unknown 55.7
1848 Female, age 42, unknown 51.7
2849 Male, age 72, unknown 48.7
2097 Female, age 72, unknown 39.9
Median raphe nucleus
nTPM: 54.8
2220 Male, age 76, midline 54.8
Periaquaductal grey, anterior
nTPM: 45.6
1947 Male, age 18, unknown 50.3
1795 Male, age 51, unknown 45.0
2502 Female, age 75, unknown 41.6
Periaquaductal grey, dorsal
nTPM: 41.0
2464 Female, age 72, unknown 62.9
1831 Male, age 72, unknown 42.7
2850 Male, age 76, both hemispheres 29.3
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 48.2
2053 Male, age 18, unknown 56.4
2272 Male, age 74, both hemispheres 54.8
2140 Male, age 76, both hemispheres 33.3
Pretectal area
nTPM: 56.5
2407 Male, age 75, both hemispheres 83.4
2316 Male, age 76, right hemisphere 72.9
1815 Male, age 53, unknown 72.1
2825 Male, age 18, unknown 57.8
2007 Male, age 72, unknown 56.6
2667 Female, age 75, unknown 51.8
1817 Female, age 42, unknown 50.0
1944 Female, age 72, unknown 48.3
2224 Female, age 72, unknown 46.3
1816 Male, age 51, unknown 42.0
2273 Male, age 74, both hemispheres 40.4
Red nucleus
nTPM: 100.1
1904 Male, age 53, unknown 118.6
1865 Male, age 51, unknown 115.1
2588 Male, age 74, left hemisphere 107.9
2769 Male, age 72, unknown 104.1
2823 Male, age 76, right hemisphere 103.9
2503 Female, age 72, unknown 103.6
2584 Male, age 75, left hemisphere 100.4
2227 Male, age 72, unknown 97.7
1821 Female, age 72, unknown 92.4
2785 Male, age 18, unknown 91.7
1954 Female, age 42, unknown 87.7
2725 Female, age 75, unknown 77.8
Substantia nigra
nTPM: 60.9
2409 Female, age 72, unknown 89.4
2583 Male, age 75, right hemisphere 84.2
2590 Female, age 75, unknown 76.6
1851 Male, age 51, unknown 62.1
1889 Female, age 72, unknown 57.9
2241 Male, age 72, unknown 56.3
2699 Male, age 18, unknown 48.7
2665 Male, age 74, both hemispheres 47.7
1941 Male, age 53, unknown 46.9
1916 Female, age 42, unknown 38.7
Superior colliculus
nTPM: 72.0
1913 Female, age 42, unknown 119.1
1995 Male, age 72, unknown 97.9
2668 Female, age 75, unknown 79.6
2587 Male, age 74, left hemisphere 67.7
1895 Male, age 76, right hemisphere 66.4
1839 Male, age 51, unknown 65.1
2261 Male, age 18, unknown 59.0
1796 Male, age 53, unknown 58.9
2664 Male, age 75, both hemispheres 57.4
2087 Female, age 72, unknown 49.4
Ventral tegmental area
nTPM: 61.4
2410 Female, age 72, unknown 78.1
2223 Female, age 72, unknown 75.7
2021 Male, age 53, unknown 54.8
1942 Male, age 51, unknown 54.7
2218 Male, age 76, both hemispheres 54.7
1915 Female, age 42, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.9
Samples: 139

Max nTPM: 138.6
Min nTPM: 8.2
Std nTPM: 20.7
Median nTPM: 34.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 138.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 126.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 97.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 93.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 89.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 73.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 68.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 68.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 67.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.5
FF:10158-103A5 76 years, female 138.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 8.0
Sample C Male 7.4
Sample D Male 6.0
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 7.5
Sample C Male 10.1
Sample D Male 8.4
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 6.6
Min nTPM: 6.0
Sample B Female 6.0
Sample C Male 6.6
Sample D Male 6.2
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 11.9
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 11.9
Sample C Male 5.7
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 2.8
Sample C Female 3.5
Sample D Female 2.7

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