BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:33.7 nTPM
GTEx:16.8 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.7
1854 Male, age 80, left hemisphere 34.2
1857 Female, age 85, left hemisphere 33.6
1781 Male, age 74, unknown 31.1
2290 Female, age 72, unknown 31.0
2846 Female, age 79, unknown 30.8
2289 Male, age 61, right hemisphere 30.4
2288 Male, age 75, left hemisphere 27.3
2481 Female, age 94, left hemisphere 19.6
Globus pallidus, externus
nTPM: 22.6
2567 Female, age 72, unknown 26.9
2395 Male, age 75, both hemispheres 26.7
2646 Male, age 61, right hemisphere 23.5
1996 Male, age 80, right hemisphere 18.1
2772 Female, age 79, unknown 18.0
Globus pallidus, internus
nTPM: 23.4
2566 Female, age 72, unknown 26.9
2111 Female, age 85, right hemisphere 24.1
2287 Male, age 75, right hemisphere 23.2
1818 Male, age 74, unknown 23.0
2778 Female, age 91, both hemispheres 22.8
2037 Male, age 80, right hemisphere 22.5
2483 Female, age 94, right hemisphere 21.0
Nucleus accumbens
nTPM: 32.2
1856 Female, age 91, right hemisphere 39.4
2824 Male, age 61, right hemisphere 39.1
1783 Male, age 74, unknown 33.9
2698 Female, age 72, unknown 32.4
1806 Female, age 85, left hemisphere 30.1
2732 Male, age 80, right hemisphere 29.6
2286 Male, age 75, left hemisphere 28.5
2391 Female, age 94, left hemisphere 24.5
Nucleus basalis of Meynert
nTPM: 26.7
2393 Male, age 80, right hemisphere 32.5
2821 Male, age 75, both hemispheres 27.1
2484 Female, age 94, left hemisphere 25.8
2569 Male, age 61, both hemispheres 21.5
Nucleus of the diagonal band
nTPM: 29.9
1979 Male, age 74, unknown 33.2
2029 Male, age 61, right hemisphere 32.2
2195 Female, age 85, both hemispheres 30.1
2775 Male, age 80, right hemisphere 29.1
1812 Female, age 91, both hemispheres 25.1
Putamen
nTPM: 30.4
1838 Male, age 80, right hemisphere 38.8
1937 Female, age 91, right hemisphere 35.4
2466 Female, age 79, unknown 30.7
1829 Male, age 74, unknown 29.7
2647 Male, age 75, left hemisphere 27.9
2489 Female, age 72, unknown 27.6
2482 Female, age 94, left hemisphere 22.6
Septal nuclei
nTPM: 30.2
2629 Female, age 94, right hemisphere 36.7
2059 Female, age 85, both hemispheres 30.8
2009 Female, age 91, both hemispheres 29.9
1960 Male, age 74, unknown 29.3
2199 Male, age 80, right hemisphere 29.1
2031 Female, age 72, unknown 28.8
2394 Male, age 61, left hemisphere 26.8
Stria terminalis, bed nucleus
nTPM: 33.7
2486 Female, age 94, both hemispheres 35.9
2201 Male, age 74, unknown 33.6
1974 Female, age 91, both hemispheres 31.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 24.2
Min nTPM: 1.5
Std nTPM: 3.9
Median nTPM: 11.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 24.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 23.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 22.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 21.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 21.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 21.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 19.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 19.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 19.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 18.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 18.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.8
Samples: 246

Max nTPM: 59.4
Min nTPM: 3.4
Std nTPM: 8.1
Median nTPM: 15.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 59.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 53.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 48.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 39.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 38.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 38.0
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 34.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 34.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 34.1
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 32.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 32.1
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Brain - Putamen (basal ganglia)
Average nTPM: 11.5
Samples: 205

Max nTPM: 29.0
Min nTPM: 1.7
Std nTPM: 4.5
Median nTPM: 10.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 29.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 27.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 25.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 24.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 23.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 23.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 21.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 20.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 20.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 19.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 19.7
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