MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.5 nTPM
HPA Brain:52.5 nTPM
GTEx:84.5 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:154.3 nTPM
Mouse:209.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
2411 Female, age 72, unknown 54.9
1870 Female, age 42, unknown 52.9
1833 Male, age 53, unknown 45.4
1827 Male, age 72, unknown 43.0
1830 Male, age 51, unknown 43.0
2019 Male, age 18, unknown 42.5
2828 Female, age 72, unknown 36.1
2219 Male, age 76, both hemispheres 35.3
2586 Male, age 75, left hemisphere 33.1
2666 Male, age 74, left hemisphere 32.0
Dorsal raphe nucleus
nTPM: 52.4
2298 Female, age 72, unknown 63.4
2750 Male, age 76, both hemispheres 56.1
2016 Female, age 72, unknown 52.1
1828 Male, age 53, unknown 48.4
2047 Male, age 72, unknown 42.1
Inferior colliculus
nTPM: 44.8
2097 Female, age 72, unknown 56.2
1890 Male, age 53, unknown 43.8
1848 Female, age 42, unknown 41.4
2849 Male, age 72, unknown 37.9
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Periaquaductal grey, anterior
nTPM: 52.5
2502 Female, age 75, unknown 58.4
1947 Male, age 18, unknown 55.5
1795 Male, age 51, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 47.6
2850 Male, age 76, both hemispheres 54.1
2464 Female, age 72, unknown 49.3
1840 Male, age 53, unknown 48.0
1831 Male, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 45.1
2272 Male, age 74, both hemispheres 50.2
2140 Male, age 76, both hemispheres 43.5
2053 Male, age 18, unknown 41.6
Pretectal area
nTPM: 45.1
2224 Female, age 72, unknown 55.4
2273 Male, age 74, both hemispheres 52.8
1817 Female, age 42, unknown 47.4
2316 Male, age 76, right hemisphere 46.2
1944 Female, age 72, unknown 46.1
2825 Male, age 18, unknown 46.0
1815 Male, age 53, unknown 45.5
1816 Male, age 51, unknown 45.5
2007 Male, age 72, unknown 42.0
2667 Female, age 75, unknown 41.7
2407 Male, age 75, both hemispheres 27.4
Red nucleus
nTPM: 47.2
1821 Female, age 72, unknown 61.5
1954 Female, age 42, unknown 55.1
1904 Male, age 53, unknown 54.6
1865 Male, age 51, unknown 51.6
2503 Female, age 72, unknown 51.3
2227 Male, age 72, unknown 49.0
2823 Male, age 76, right hemisphere 46.0
2769 Male, age 72, unknown 45.4
2725 Female, age 75, unknown 44.1
2785 Male, age 18, unknown 40.8
2588 Male, age 74, left hemisphere 34.2
2584 Male, age 75, left hemisphere 33.3
Substantia nigra
nTPM: 46.4
2241 Male, age 72, unknown 69.0
1916 Female, age 42, unknown 50.5
1851 Male, age 51, unknown 50.1
1889 Female, age 72, unknown 49.7
2590 Female, age 75, unknown 45.2
2699 Male, age 18, unknown 44.4
1941 Male, age 53, unknown 40.3
2409 Female, age 72, unknown 39.5
2665 Male, age 74, both hemispheres 39.5
2583 Male, age 75, right hemisphere 35.9
Superior colliculus
nTPM: 43.7
1995 Male, age 72, unknown 49.6
1913 Female, age 42, unknown 49.1
2261 Male, age 18, unknown 48.3
2587 Male, age 74, left hemisphere 44.6
2087 Female, age 72, unknown 44.4
1796 Male, age 53, unknown 44.1
2668 Female, age 75, unknown 44.0
1839 Male, age 51, unknown 41.9
1895 Male, age 76, right hemisphere 41.8
2664 Male, age 75, both hemispheres 29.7
Ventral tegmental area
nTPM: 48.6
2410 Female, age 72, unknown 55.5
2223 Female, age 72, unknown 49.9
2218 Male, age 76, both hemispheres 49.3
1915 Female, age 42, unknown 47.1
1942 Male, age 51, unknown 46.1
2021 Male, age 53, unknown 43.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.5
Samples: 139

Max nTPM: 146.4
Min nTPM: 58.1
Std nTPM: 16.5
Median nTPM: 79.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 146.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 139.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 127.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 123.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 123.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 119.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 115.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 114.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 113.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 112.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 154.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 141.8
Samples: 4

Max nTPM: 205.1
Min nTPM: 113.1
Sample A Female 205.1
Sample B Female 113.1
Sample C Male 127.0
Sample D Male 122.1
Midbrain
nTPM: 154.3
Samples: 4

Max nTPM: 269.1
Min nTPM: 106.8
Sample A Female 269.1
Sample B Female 131.8
Sample C Male 109.5
Sample D Male 106.8
Periaqueductal gray
nTPM: 119.1
Samples: 3

Max nTPM: 127.1
Min nTPM: 114.5
Sample B Female 115.8
Sample C Male 127.1
Sample D Male 114.5
Superior colliculi
nTPM: 144.7
Samples: 4

Max nTPM: 190.4
Min nTPM: 121.6
Sample A Female 190.4
Sample B Female 134.6
Sample C Male 132.0
Sample D Male 121.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.5
Samples: 4

Max nTPM: 223.9
Min nTPM: 195.9
Sample A Male 215.5
Sample B Male 195.9
Sample C Female 202.7
Sample D Female 223.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
671225 Antisense, RP_040914_01_G11, Mouse strain C57BL/6J (56 days, male) 6.5

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