MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA Brain:69.5 nTPM
GTEx:47.6 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:84.2 nTPM
Mouse:108.7 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.7
2666 Male, age 74, left hemisphere 80.0
2019 Male, age 18, unknown 73.6
2586 Male, age 75, left hemisphere 71.7
1833 Male, age 53, unknown 69.4
1830 Male, age 51, unknown 67.7
1870 Female, age 42, unknown 66.0
2411 Female, age 72, unknown 65.5
1827 Male, age 72, unknown 64.9
2219 Male, age 76, both hemispheres 64.9
2828 Female, age 72, unknown 63.2
Dorsal raphe nucleus
nTPM: 61.0
2016 Female, age 72, unknown 65.5
2750 Male, age 76, both hemispheres 63.4
1828 Male, age 53, unknown 62.0
2298 Female, age 72, unknown 58.2
2047 Male, age 72, unknown 55.8
Inferior colliculus
nTPM: 66.5
1890 Male, age 53, unknown 70.3
2849 Male, age 72, unknown 68.0
2097 Female, age 72, unknown 65.4
1848 Female, age 42, unknown 62.2
Median raphe nucleus
nTPM: 61.4
2220 Male, age 76, midline 61.4
Periaquaductal grey, anterior
nTPM: 58.0
2502 Female, age 75, unknown 63.2
1947 Male, age 18, unknown 58.0
1795 Male, age 51, unknown 52.8
Periaquaductal grey, dorsal
nTPM: 63.3
1840 Male, age 53, unknown 66.5
2464 Female, age 72, unknown 63.7
2850 Male, age 76, both hemispheres 62.5
1831 Male, age 72, unknown 60.5
Periaquaductal grey, lateral
nTPM: 55.7
2140 Male, age 76, both hemispheres 58.9
2053 Male, age 18, unknown 54.8
2272 Male, age 74, both hemispheres 53.3
Pretectal area
nTPM: 62.3
2007 Male, age 72, unknown 72.8
1817 Female, age 42, unknown 71.7
1816 Male, age 51, unknown 71.1
1815 Male, age 53, unknown 70.9
1944 Female, age 72, unknown 66.1
2316 Male, age 76, right hemisphere 60.0
2224 Female, age 72, unknown 57.2
2407 Male, age 75, both hemispheres 55.8
2825 Male, age 18, unknown 55.8
2667 Female, age 75, unknown 54.1
2273 Male, age 74, both hemispheres 49.8
Red nucleus
nTPM: 69.4
2785 Male, age 18, unknown 80.1
2503 Female, age 72, unknown 78.0
2588 Male, age 74, left hemisphere 72.7
1821 Female, age 72, unknown 72.1
2725 Female, age 75, unknown 69.4
1904 Male, age 53, unknown 69.3
1865 Male, age 51, unknown 68.7
1954 Female, age 42, unknown 65.7
2584 Male, age 75, left hemisphere 65.2
2769 Male, age 72, unknown 65.1
2823 Male, age 76, right hemisphere 64.3
2227 Male, age 72, unknown 62.3
Substantia nigra
nTPM: 69.5
2665 Male, age 74, both hemispheres 82.8
2241 Male, age 72, unknown 77.1
1889 Female, age 72, unknown 72.9
2699 Male, age 18, unknown 71.9
1851 Male, age 51, unknown 70.8
1916 Female, age 42, unknown 70.0
2409 Female, age 72, unknown 65.1
2583 Male, age 75, right hemisphere 62.9
2590 Female, age 75, unknown 61.3
1941 Male, age 53, unknown 60.1
Superior colliculus
nTPM: 64.9
2587 Male, age 74, left hemisphere 76.4
2668 Female, age 75, unknown 76.0
1995 Male, age 72, unknown 68.3
1913 Female, age 42, unknown 65.8
1839 Male, age 51, unknown 63.5
1895 Male, age 76, right hemisphere 62.9
2087 Female, age 72, unknown 62.1
1796 Male, age 53, unknown 59.5
2664 Male, age 75, both hemispheres 58.8
2261 Male, age 18, unknown 56.0
Ventral tegmental area
nTPM: 63.4
2223 Female, age 72, unknown 67.0
2410 Female, age 72, unknown 66.1
1915 Female, age 42, unknown 63.9
2218 Male, age 76, both hemispheres 62.3
1942 Male, age 51, unknown 61.1
2021 Male, age 53, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.6
Samples: 139

Max nTPM: 88.2
Min nTPM: 28.8
Std nTPM: 11.6
Median nTPM: 44.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 79.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 78.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 76.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 73.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 73.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 72.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 71.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 66.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.4
Samples: 4

Max nTPM: 87.1
Min nTPM: 78.5
Sample A Female 87.1
Sample B Female 79.8
Sample C Male 78.5
Sample D Male 84.2
Midbrain
nTPM: 84.2
Samples: 4

Max nTPM: 88.0
Min nTPM: 81.7
Sample A Female 88.0
Sample B Female 82.3
Sample C Male 84.7
Sample D Male 81.7
Periaqueductal gray
nTPM: 76.4
Samples: 3

Max nTPM: 80.5
Min nTPM: 70.7
Sample B Female 78.1
Sample C Male 80.5
Sample D Male 70.7
Superior colliculi
nTPM: 79.5
Samples: 4

Max nTPM: 95.3
Min nTPM: 61.5
Sample A Female 95.3
Sample B Female 61.5
Sample C Male 79.8
Sample D Male 81.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 108.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.7
Samples: 4

Max nTPM: 111.2
Min nTPM: 104.4
Sample A Male 104.4
Sample B Male 110.9
Sample C Female 111.2
Sample D Female 108.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 6.3
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 1.9

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