HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:74.5 nTPM
GTEx:45.2 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:88.4 nTPM
Mouse:101.9 nTPM
Allen mouse:9.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003591Antibody HPA003639
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 74.5
Sample id Sample description nTPM
Hippocampus
nTPM: 74.0
2621 Female, age 67, right hemisphere 80.7
2529 Female, age 94, left hemisphere 79.5
1898 Male, age 80, left hemisphere 74.8
2148 Female, age 91, left hemisphere 72.6
1911 Female, age 85, right hemisphere 71.0
1855 Male, age 76, left hemisphere 65.3
Dentate gyrus
nTPM: 69.3
2530 Female, age 94, left hemisphere 77.5
2531 Female, age 67, both hemispheres 76.8
2246 Female, age 85, both hemispheres 71.6
1927 Female, age 91, both hemispheres 69.6
2010 Male, age 76, both hemispheres 62.1
2528 Male, age 74, both hemispheres 58.5
Entorhinal gyrus
nTPM: 66.8
2686 Male, age 75, right hemisphere 80.8
2117 Female, age 91, right hemisphere 67.2
1938 Female, age 85, left hemisphere 66.3
2613 Female, age 94, left hemisphere 64.7
1787 Male, age 76, left hemisphere 61.8
2764 Male, age 80, right hemisphere 59.9
Hippocampus, CA1
nTPM: 73.1
2749 Male, age 80, left hemisphere 90.4
1873 Female, age 85, both hemispheres 74.1
2045 Male, age 76, both hemispheres 71.9
2527 Male, age 74, both hemispheres 70.1
2082 Female, age 91, right hemisphere 58.9
Hippocampus, CA2
nTPM: 69.7
1963 Male, age 80, left hemisphere 84.7
1892 Male, age 76, both hemispheres 72.2
2437 Female, age 94, left hemisphere 71.5
2113 Female, age 91, right hemisphere 66.9
1940 Female, age 85, left hemisphere 63.1
2249 Male, age 74, both hemispheres 60.0
Hippocampus, CA3
nTPM: 74.5
2137 Male, age 80, left hemisphere 89.5
1891 Female, age 85, both hemispheres 80.0
2861 Female, age 67, both hemispheres 79.4
1867 Male, age 76, both hemispheres 73.6
2620 Female, age 94, left hemisphere 65.9
2436 Male, age 74, both hemispheres 58.8
Parahippocampal cortex
nTPM: 64.8
2250 Female, age 67, right hemisphere 68.7
2245 Female, age 91, both hemispheres 67.7
1850 Male, age 80, both hemispheres 67.1
2532 Female, age 72, left hemisphere 67.0
1933 Female, age 85, both hemispheres 65.4
2018 Male, age 76, both hemispheres 65.1
2692 Male, age 74, both hemispheres 64.4
2622 Female, age 67, right hemisphere 61.9
2693 Female, age 94, both hemispheres 61.3
1990 Female, age 91, right hemisphere 59.1
Perirhinal gyrus
nTPM: 65.3
1841 Female, age 85, right hemisphere 71.5
1847 Female, age 91, left hemisphere 67.7
1794 Male, age 80, right hemisphere 64.4
2521 Female, age 94, right hemisphere 62.0
2848 Male, age 76, right hemisphere 60.8
Subiculum
nTPM: 69.4
2438 Female, age 94, left hemisphere 74.2
1901 Male, age 80, both hemispheres 72.8
1977 Female, age 85, both hemispheres 72.8
2729 Female, age 91, right hemisphere 67.5
2042 Male, age 76, both hemispheres 66.9
2619 Male, age 74, both hemispheres 62.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.2
Samples: 197

Max nTPM: 83.8
Min nTPM: 22.7
Std nTPM: 8.1
Median nTPM: 43.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 83.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 75.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 69.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 69.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 69.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 69.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 64.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 64.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 62.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 62.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 61.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 43.7
FF:10153-102I9 76 years, female 44.8
FF:10169-103B7 60 years, female 42.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 88.4
Pig sample Sample description nTPM
Subiculum
nTPM: 85.3
Samples: 4

Max nTPM: 102.5
Min nTPM: 76.1
Sample A Female 102.5
Sample B Female 84.2
Sample C Male 78.2
Sample D Male 76.1
Dorsal hippocampus
nTPM: 88.4
Samples: 4

Max nTPM: 97.0
Min nTPM: 80.1
Sample A Female 97.0
Sample B Female 92.4
Sample C Male 84.1
Sample D Male 80.1
Entorhinal cortex
nTPM: 87.2
Samples: 4

Max nTPM: 95.9
Min nTPM: 71.0
Sample A Female 92.0
Sample B Female 95.9
Sample C Male 89.8
Sample D Male 71.0
Ventral hippocampus
nTPM: 85.5
Samples: 4

Max nTPM: 96.0
Min nTPM: 73.2
Sample A Female 73.2
Sample B Female 78.8
Sample C Male 94.1
Sample D Male 96.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 101.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 101.9
Samples: 4

Max nTPM: 111.1
Min nTPM: 97.1
Sample A Male 98.6
Sample B Male 100.7
Sample C Female 97.1
Sample D Female 111.1
Hippocampal formation
nTPM: 98.5
Samples: 4

Max nTPM: 106.8
Min nTPM: 87.3
Sample A Male 103.3
Sample B Male 96.6
Sample C Female 106.8
Sample D Female 87.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.2
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 15.1
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 3.4

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