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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.1
nTPM
Monaco:
20.2
nTPM
Schmiedel:
81.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
12.1
HPA sample
nTPM
gdT-cell nTPM: 6.5
Samples: 6
Max nTPM: 7.7
Min nTPM: 5.5
P10809_1007
5.6
P10809_1022
5.5
P10809_1041
7.1
P10809_1060
5.5
P10809_1077
7.7
P10809_1098
7.6
MAIT T-cell nTPM: 10.8
Samples: 6
Max nTPM: 14.3
Min nTPM: 7.6
P10809_1006
9.2
P10809_1024
7.6
P10809_1043
12.0
P10809_1062
10.0
P10809_1083
11.8
P10809_1097
14.3
Memory CD4 T-cell nTPM: 7.9
Samples: 6
Max nTPM: 11.7
Min nTPM: 4.9
P10809_1014
7.5
P10809_1026
11.7
P10809_1045
9.0
P10809_1064
5.6
P10809_1086
4.9
P10809_1113
8.8
Memory CD8 T-cell nTPM: 7.1
Samples: 5
Max nTPM: 7.9
Min nTPM: 6.6
P10809_1012
7.0
P10809_1027
7.0
P10809_1046
6.6
P10809_1065
7.9
P10809_1111
6.8
Naive CD4 T-cell nTPM: 12.1
Samples: 6
Max nTPM: 14.5
Min nTPM: 9.6
P10809_1015
14.5
P10809_1030
14.2
P10809_1049
9.6
P10809_1068
11.5
P10809_1085
11.2
P10809_1112
11.6
Naive CD8 T-cell nTPM: 9.8
Samples: 6
Max nTPM: 15.1
Min nTPM: 7.3
P10809_1016
15.1
P10809_1031
9.8
P10809_1050
7.3
P10809_1069
8.4
P10809_1087
7.9
P10809_1110
10.5
T-reg nTPM: 6.0
Samples: 6
Max nTPM: 14.0
Min nTPM: 0.0
P10809_1018
5.6
P10809_1037
4.8
P10809_1056
0.0
P10809_1075
14.0
P10809_1094
3.8
P10809_1106
7.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
20.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.1
Samples: 4
Max nTPM: 22.2
Min nTPM: 8.6
RHH5202_R3573
22.2
RHH5230_R3602
17.5
RHH5259_R3631
8.6
RHH5288_R3660
12.0
Effector memory CD8 T-cell nTPM: 9.0
Samples: 4
Max nTPM: 11.8
Min nTPM: 5.7
RHH5203_R3574
11.8
RHH5231_R3603
10.5
RHH5260_R3632
5.7
RHH5289_R3661
7.9
MAIT T-cell nTPM: 12.0
Samples: 4
Max nTPM: 13.0
Min nTPM: 9.0
RHH5233_R3605
9.0
RHH5205_R3576
12.8
RHH5262_R3634
13.0
RHH5297_R3663
13.0
Memory CD4 T-cell TFH nTPM: 9.7
Samples: 4
Max nTPM: 14.0
Min nTPM: 5.9
RHH5300_R3666
6.6
RHH5236_R3608
14.0
RHH5265_R3637
5.9
RHH5208_R3579
12.1
Memory CD4 T-cell Th1 nTPM: 19.3
Samples: 4
Max nTPM: 33.1
Min nTPM: 12.6
RHH5210_R3581
33.1
RHH5302_R3668
15.9
RHH5238_R3610
15.6
RHH5267_R3639
12.6
Memory CD4 T-cell Th1/Th17 nTPM: 13.2
Samples: 4
Max nTPM: 20.7
Min nTPM: 9.2
RHH5303_R3669
20.7
RHH5211_R3582
11.0
RHH5239_R3611
9.2
RHH5268_R3640
11.9
Memory CD4 T-cell Th17 nTPM: 8.6
Samples: 4
Max nTPM: 12.6
Min nTPM: 5.8
RHH5304_R3670
6.5
RHH5212_R3583
9.4
RHH5240_R3612
5.8
RHH5269_R3641
12.6
Memory CD4 T-cell Th2 nTPM: 13.2
Samples: 4
Max nTPM: 15.9
Min nTPM: 10.5
RHH5305_R3671
15.9
RHH5213_R3584
14.1
RHH5241_R3613
12.3
RHH5270_R3642
10.5
Naive CD4 T-cell nTPM: 15.0
Samples: 4
Max nTPM: 18.0
Min nTPM: 10.8
RHH5306_R3672
13.8
RHH5214_R3585
17.3
RHH5242_R3614
18.0
RHH5271_R3643
10.8
Naive CD8 T-cell nTPM: 20.2
Samples: 4
Max nTPM: 29.8
Min nTPM: 15.2
RHH5201_R3572
29.8
RHH5229_R3601
19.8
RHH5258_R3630
15.8
RHH5287_R3659
15.2
Non-Vd2 gdTCR nTPM: 6.8
Samples: 4
Max nTPM: 16.4
Min nTPM: 2.9
RHH5235_R3607
3.4
RHH5264_R3636
4.4
RHH5207_R3578
16.4
RHH5299_R3665
2.9
T-reg nTPM: 10.7
Samples: 4
Max nTPM: 16.2
Min nTPM: 7.3
RHH5301_R3667
9.8
RHH5237_R3609
16.2
RHH5266_R3638
7.3
RHH5209_R3580
9.5
Terminal effector memory CD4 T-cell nTPM: 6.8
Samples: 2
Max nTPM: 9.8
Min nTPM: 3.7
RHH5243_R3615
3.7
RHH5272_R3644
9.8
Terminal effector memory CD8 T-cell nTPM: 6.4
Samples: 4
Max nTPM: 7.5
Min nTPM: 5.6
RHH5232_R3604
6.4
RHH5204_R3575
5.6
RHH5261_R3633
6.2
RHH5296_R3662
7.5
Vd2 gdTCR nTPM: 8.2
Samples: 4
Max nTPM: 11.2
Min nTPM: 5.5
RHH5234_R3606
8.0
RHH5206_R3577
8.2
RHH5263_R3635
5.5
RHH5298_R3664
11.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
