HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:53.8 nTPM
HPA Brain:28.7 nTPM
GTEx:53.8 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:50.9 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042117Antibody HPA046767
Glial cells Not detectedLow
Neuronal cells MediumLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Hippocampus
nTPM: 25.2
1898 Male, age 80, left hemisphere 33.9
1855 Male, age 76, left hemisphere 24.2
2148 Female, age 91, left hemisphere 23.9
2621 Female, age 67, right hemisphere 23.9
1911 Female, age 85, right hemisphere 23.8
2529 Female, age 94, left hemisphere 21.8
Dentate gyrus
nTPM: 24.6
2010 Male, age 76, both hemispheres 29.3
1927 Female, age 91, both hemispheres 27.4
2530 Female, age 94, left hemisphere 25.6
2246 Female, age 85, both hemispheres 24.2
2528 Male, age 74, both hemispheres 22.1
2531 Female, age 67, both hemispheres 19.1
Entorhinal gyrus
nTPM: 25.2
2117 Female, age 91, right hemisphere 27.1
2764 Male, age 80, right hemisphere 26.6
1938 Female, age 85, left hemisphere 26.0
2686 Male, age 75, right hemisphere 24.4
2613 Female, age 94, left hemisphere 24.2
1787 Male, age 76, left hemisphere 22.8
Hippocampus, CA1
nTPM: 28.7
2749 Male, age 80, left hemisphere 40.0
1873 Female, age 85, both hemispheres 29.1
2527 Male, age 74, both hemispheres 27.1
2045 Male, age 76, both hemispheres 24.9
2082 Female, age 91, right hemisphere 22.4
Hippocampus, CA2
nTPM: 26.5
1892 Male, age 76, both hemispheres 33.5
2437 Female, age 94, left hemisphere 27.9
1963 Male, age 80, left hemisphere 27.7
2249 Male, age 74, both hemispheres 25.1
1940 Female, age 85, left hemisphere 24.7
2113 Female, age 91, right hemisphere 20.2
Hippocampus, CA3
nTPM: 27.7
1867 Male, age 76, both hemispheres 31.8
2620 Female, age 94, left hemisphere 30.6
2137 Male, age 80, left hemisphere 28.1
2436 Male, age 74, both hemispheres 27.8
1891 Female, age 85, both hemispheres 26.9
2861 Female, age 67, both hemispheres 21.1
Parahippocampal cortex
nTPM: 23.9
2018 Male, age 76, both hemispheres 29.9
1850 Male, age 80, both hemispheres 28.2
1933 Female, age 85, both hemispheres 25.4
2532 Female, age 72, left hemisphere 25.2
1990 Female, age 91, right hemisphere 25.1
2245 Female, age 91, both hemispheres 24.7
2692 Male, age 74, both hemispheres 22.2
2250 Female, age 67, right hemisphere 21.7
2693 Female, age 94, both hemispheres 19.5
2622 Female, age 67, right hemisphere 17.2
Perirhinal gyrus
nTPM: 26.1
1847 Female, age 91, left hemisphere 31.4
1794 Male, age 80, right hemisphere 29.4
1841 Female, age 85, right hemisphere 27.3
2848 Male, age 76, right hemisphere 22.0
2521 Female, age 94, right hemisphere 20.6
Subiculum
nTPM: 25.6
1901 Male, age 80, both hemispheres 30.1
2438 Female, age 94, left hemisphere 26.5
1977 Female, age 85, both hemispheres 25.2
2042 Male, age 76, both hemispheres 24.8
2619 Male, age 74, both hemispheres 24.8
2729 Female, age 91, right hemisphere 22.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.8
Samples: 197

Max nTPM: 144.4
Min nTPM: 22.9
Std nTPM: 15.4
Median nTPM: 50.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 144.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 112.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 100.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 97.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 92.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 91.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 89.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 88.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 88.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 86.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 84.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.3
FF:10169-103B7 60 years, female 38.4
FF:10153-102I9 76 years, female 24.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.1
Pig sample Sample description nTPM
Subiculum
nTPM: 23.0
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.7
Sample A Female 26.1
Sample B Female 22.3
Sample C Male 22.8
Sample D Male 20.7
Dorsal hippocampus
nTPM: 26.1
Samples: 4

Max nTPM: 30.9
Min nTPM: 21.2
Sample A Female 30.9
Sample B Female 26.3
Sample C Male 25.9
Sample D Male 21.2
Entorhinal cortex
nTPM: 25.7
Samples: 4

Max nTPM: 30.9
Min nTPM: 21.7
Sample A Female 25.8
Sample B Female 30.9
Sample C Male 24.3
Sample D Male 21.7
Ventral hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.8
Sample A Female 20.9
Sample B Female 17.8
Sample C Male 25.1
Sample D Male 24.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.9
Samples: 4

Max nTPM: 53.7
Min nTPM: 45.4
Sample A Male 45.4
Sample B Male 53.7
Sample C Female 46.2
Sample D Female 46.1
Hippocampal formation
nTPM: 50.9
Samples: 4

Max nTPM: 57.7
Min nTPM: 43.6
Sample A Male 53.9
Sample B Male 48.3
Sample C Female 43.6
Sample D Female 57.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69262249 Antisense, RP_050301_01_H09, Mouse strain C57BL/6J (56 days, male) 0.7
74819464 Antisense, RP_060315_02_F06, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org