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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
113.1
nTPM
FANTOM5:
94.0
Scaled Tags Per Million
Pig:
88.8
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
113.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 75.3
2090
Male, age 80, both hemispheres
82.4
2188
Female, age 91, both hemispheres
79.9
1984
Male, age 76, both hemispheres
71.0
2301
Female, age 85, both hemispheres
67.9
Dorsal cochlear nucleus nTPM: 84.3
2802
Male, age 74, right hemisphere
103.6
2187
Female, age 91, both hemispheres
95.3
2370
Male, age 61, both hemispheres
83.8
2058
Male, age 76, both hemispheres
69.5
2378
Male, age 80, both hemispheres
69.1
Dorsal tegmental nucleus nTPM: 86.3
2326
Male, age 74, both hemispheres
98.9
1936
Male, age 76, left hemisphere
94.7
2083
Male, age 80, both hemispheres
76.4
2358
Male, age 61, both hemispheres
75.3
Dorsolateral tegmental area nTPM: 88.2
2360
Male, age 74, both hemispheres
106.6
2751
Female, age 85, both hemispheres
103.3
2654
Male, age 80, both hemispheres
86.5
2141
Male, age 76, both hemispheres
72.6
2337
Male, age 61, both hemispheres
72.1
Kolliker-Fuse nucleus nTPM: 92.2
2793
Female, age 91, left hemisphere
99.6
2163
Male, age 80, both hemispheres
96.3
2315
Male, age 76, right hemisphere
80.7
Lateral lemniscal nuclei nTPM: 83.0
2169
Male, age 76, both hemispheres
103.8
2036
Male, age 80, both hemispheres
100.9
2746
Female, age 85, left hemisphere
86.4
2453
Male, age 74, right hemisphere
66.0
2320
Female, age 91, left hemisphere
57.8
Lateral parabrachial nucleus nTPM: 96.1
2013
Male, age 80, both hemispheres
106.5
2139
Female, age 85, right hemisphere
99.0
2792
Male, age 76, both hemispheres
91.7
2790
Male, age 61, both hemispheres
87.4
Lateral vestibular nucleus nTPM: 79.0
2184
Male, age 76, both hemispheres
84.6
2311
Male, age 80, both hemispheres
73.5
Locus coeruleus nTPM: 100.9
2720
Male, age 74, both hemispheres
133.4
2788
Male, age 74, unknown
127.6
2123
Female, age 91, both hemispheres
111.8
2014
Male, age 55, unknown
98.2
1980
Male, age 76, both hemispheres
82.4
2162
Male, age 80, both hemispheres
77.0
2317
Female, age 72, unknown
75.7
Medial parabrachial nucleus nTPM: 92.9
2854
Male, age 80, both hemispheres
126.0
2170
Female, age 91, both hemispheres
111.7
2786
Male, age 76, both hemispheres
83.2
2463
Female, age 85, right hemisphere
76.6
2156
Male, age 61, both hemispheres
66.9
Medial periolivary nuclei nTPM: 93.2
2791
Male, age 74, right hemisphere
124.2
2171
Female, age 85, both hemispheres
110.7
2063
Male, age 76, both hemispheres
93.4
2458
Female, age 91, both hemispheres
74.2
2081
Male, age 80, both hemispheres
63.4
Motor facial nucleus nTPM: 89.1
2062
Male, age 76, both hemispheres
101.2
2365
Male, age 74, right hemisphere
98.0
2697
Female, age 85, both hemispheres
96.2
2126
Male, age 61, both hemispheres
86.3
2795
Female, age 91, both hemispheres
84.1
2327
Male, age 80, both hemispheres
68.7
Motor trigeminal nucleus nTPM: 73.8
2560
Male, age 74, both hemispheres
84.8
2079
Male, age 80, both hemispheres
78.3
2309
Male, age 76, both hemispheres
77.4
2321
Female, age 91, both hemispheres
64.6
2335
Male, age 61, both hemispheres
63.8
Nuclei of the trapezoid body nTPM: 100.8
2159
Male, age 61, both hemispheres
126.6
1983
Male, age 76, both hemispheres
121.8
2735
Female, age 85, both hemispheres
110.5
2166
Male, age 80, both hemispheres
77.7
2368
Female, age 91, both hemispheres
67.2
Nucleus raphe magnus nTPM: 98.1
2160
Male, age 61, both hemispheres
136.8
2172
Female, age 85, both hemispheres
112.9
2051
Male, age 76, both hemispheres
103.3
2455
Male, age 74, both hemispheres
92.5
2459
Female, age 91, both hemispheres
74.6
2328
Male, age 80, both hemispheres
68.4
Paramedian reticular nucleus nTPM: 113.1
2050
Female, age 85, both hemispheres
148.2
2052
Male, age 76, both hemispheres
135.4
2313
Male, age 61, both hemispheres
87.5
2057
Male, age 80, both hemispheres
81.4
Pedunculopontine tegmental nucleus nTPM: 98.3
1921
Female, age 85, both hemispheres
110.4
2338
Male, age 61, both hemispheres
101.3
2334
Male, age 80, both hemispheres
83.2
Pontine nuclei nTPM: 108.8
1863
Male, age 55, unknown
135.0
2727
Male, age 61, right hemisphere
128.4
2109
Female, age 72, unknown
121.3
2787
Female, age 85, both hemispheres
119.7
2454
Male, age 74, left hemisphere
110.9
1968
Male, age 76, left hemisphere
107.0
2319
Female, age 91, both hemispheres
79.0
2115
Male, age 80, left hemisphere
68.8
Pontine raphe nucleus nTPM: 94.5
2853
Male, age 76, midline
97.9
2122
Female, age 85, midline
91.1
Posteroventral cochlear nucleus nTPM: 86.3
2752
Female, age 85, both hemispheres
100.7
2341
Male, age 80, both hemispheres
93.3
2371
Male, age 61, both hemispheres
89.4
2070
Male, age 76, both hemispheres
75.7
2135
Female, age 91, both hemispheres
72.2
Principal sensory trigeminal nucleus nTPM: 91.0
2158
Male, age 61, both hemispheres
113.6
2008
Male, age 80, left hemisphere
103.6
2367
Female, age 91, left hemisphere
75.7
2324
Male, age 76, both hemispheres
71.0
Reticular pontine nucleus, caudal nTPM: 86.1
2559
Male, age 74, both hemispheres
113.2
2092
Male, age 76, both hemispheres
97.3
2457
Female, age 91, both hemispheres
68.9
2332
Male, age 80, right hemisphere
64.9
Reticular pontine nucleus, oral nTPM: 95.1
2012
Female, age 85, both hemispheres
109.6
1939
Male, age 80, both hemispheres
108.3
2167
Male, age 76, both hemispheres
97.5
2361
Male, age 74, both hemispheres
83.7
2366
Female, age 91, both hemispheres
76.3
Reticulotegmental nucleus nTPM: 71.6
2325
Male, age 76, both hemispheres
79.2
2452
Male, age 74, both hemispheres
72.0
2322
Female, age 91, both hemispheres
70.0
2333
Male, age 80, both hemispheres
65.2
Spinal trigeminal nucleus, oral nTPM: 79.6
2737
Female, age 85, both hemispheres
88.5
1978
Male, age 76, both hemispheres
78.2
2164
Male, age 80, both hemispheres
72.2
Subcoeruleus area nTPM: 94.3
1958
Male, age 80, both hemispheres
122.5
2369
Female, age 85, left hemisphere
96.1
2323
Female, age 91, left hemisphere
95.8
2451
Male, age 74, both hemispheres
86.1
2089
Male, age 76, left hemisphere
71.2
Superior olive nTPM: 96.7
1875
Female, age 85, both hemispheres
148.1
2020
Male, age 76, both hemispheres
110.5
2364
Male, age 74, right hemisphere
84.6
2561
Female, age 91, both hemispheres
74.5
2329
Male, age 80, right hemisphere
65.8
Ventral periolivary nuclei nTPM: 93.1
2023
Male, age 76, both hemispheres
109.0
2130
Female, age 85, both hemispheres
107.2
2165
Male, age 80, both hemispheres
87.9
2794
Female, age 91, left hemisphere
68.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 88.3
1959
Male, age 76, both hemispheres
118.8
2840
Female, age 85, both hemispheres
113.6
2359
Male, age 61, both hemispheres
90.1
2449
Male, age 74, both hemispheres
71.4
2161
Male, age 80, both hemispheres
70.3
2456
Female, age 91, both hemispheres
65.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
