MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.2 nTPM
HPA Brain:67.7 nTPM
GTEx:57.2 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:31.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2586 Male, age 75, left hemisphere 68.5
2828 Female, age 72, unknown 60.6
2666 Male, age 74, left hemisphere 57.2
1870 Female, age 42, unknown 50.3
1833 Male, age 53, unknown 49.7
2019 Male, age 18, unknown 49.3
2219 Male, age 76, both hemispheres 46.8
1830 Male, age 51, unknown 45.7
1827 Male, age 72, unknown 45.4
2411 Female, age 72, unknown 42.9
Dorsal raphe nucleus
nTPM: 60.7
1828 Male, age 53, unknown 69.5
2047 Male, age 72, unknown 69.0
2016 Female, age 72, unknown 66.0
2298 Female, age 72, unknown 57.4
2750 Male, age 76, both hemispheres 41.8
Inferior colliculus
nTPM: 56.3
1890 Male, age 53, unknown 60.1
2849 Male, age 72, unknown 55.6
1848 Female, age 42, unknown 55.5
2097 Female, age 72, unknown 53.9
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Periaquaductal grey, anterior
nTPM: 67.7
1947 Male, age 18, unknown 82.0
1795 Male, age 51, unknown 66.3
2502 Female, age 75, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 58.8
2850 Male, age 76, both hemispheres 72.9
1840 Male, age 53, unknown 60.7
2464 Female, age 72, unknown 57.2
1831 Male, age 72, unknown 44.5
Periaquaductal grey, lateral
nTPM: 58.9
2140 Male, age 76, both hemispheres 80.3
2053 Male, age 18, unknown 51.3
2272 Male, age 74, both hemispheres 45.1
Pretectal area
nTPM: 55.6
1817 Female, age 42, unknown 72.7
2667 Female, age 75, unknown 65.1
2224 Female, age 72, unknown 59.0
1815 Male, age 53, unknown 55.8
2316 Male, age 76, right hemisphere 55.4
1944 Female, age 72, unknown 54.3
1816 Male, age 51, unknown 53.1
2007 Male, age 72, unknown 52.8
2825 Male, age 18, unknown 52.3
2407 Male, age 75, both hemispheres 45.7
2273 Male, age 74, both hemispheres 44.7
Red nucleus
nTPM: 56.3
1821 Female, age 72, unknown 76.7
1954 Female, age 42, unknown 66.8
2769 Male, age 72, unknown 61.1
2227 Male, age 72, unknown 59.4
1904 Male, age 53, unknown 57.6
2503 Female, age 72, unknown 55.8
2588 Male, age 74, left hemisphere 53.8
1865 Male, age 51, unknown 53.6
2785 Male, age 18, unknown 51.7
2725 Female, age 75, unknown 51.6
2823 Male, age 76, right hemisphere 51.5
2584 Male, age 75, left hemisphere 35.9
Substantia nigra
nTPM: 55.6
2409 Female, age 72, unknown 65.6
1916 Female, age 42, unknown 60.6
2665 Male, age 74, both hemispheres 59.7
1851 Male, age 51, unknown 59.3
2699 Male, age 18, unknown 58.1
2241 Male, age 72, unknown 57.2
2590 Female, age 75, unknown 54.4
1889 Female, age 72, unknown 53.3
2583 Male, age 75, right hemisphere 47.5
1941 Male, age 53, unknown 40.0
Superior colliculus
nTPM: 49.6
2668 Female, age 75, unknown 55.5
1995 Male, age 72, unknown 54.1
1839 Male, age 51, unknown 52.8
2087 Female, age 72, unknown 51.6
2664 Male, age 75, both hemispheres 51.0
2261 Male, age 18, unknown 49.7
1895 Male, age 76, right hemisphere 47.1
1796 Male, age 53, unknown 46.8
1913 Female, age 42, unknown 45.6
2587 Male, age 74, left hemisphere 42.0
Ventral tegmental area
nTPM: 53.1
1915 Female, age 42, unknown 57.7
2021 Male, age 53, unknown 57.7
1942 Male, age 51, unknown 55.7
2410 Female, age 72, unknown 53.1
2218 Male, age 76, both hemispheres 50.9
2223 Female, age 72, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.2
Samples: 139

Max nTPM: 149.8
Min nTPM: 13.9
Std nTPM: 24.2
Median nTPM: 53.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 149.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 134.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 125.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 121.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 113.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 112.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 109.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 100.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 99.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 99.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 94.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.3
FF:10158-103A5 76 years, female 44.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.0
Samples: 4

Max nTPM: 86.4
Min nTPM: 63.7
Sample A Female 71.0
Sample B Female 86.4
Sample C Male 74.7
Sample D Male 63.7
Midbrain
nTPM: 75.0
Samples: 4

Max nTPM: 108.6
Min nTPM: 53.5
Sample A Female 108.6
Sample B Female 75.7
Sample C Male 62.2
Sample D Male 53.5
Periaqueductal gray
nTPM: 74.8
Samples: 3

Max nTPM: 80.0
Min nTPM: 71.8
Sample B Female 71.8
Sample C Male 80.0
Sample D Male 72.5
Superior colliculi
nTPM: 67.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 58.1
Sample A Female 66.5
Sample B Female 81.0
Sample C Male 58.1
Sample D Male 65.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 32.9
Min nTPM: 27.3
Sample A Male 31.3
Sample B Male 27.3
Sample C Female 32.9
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69837243 Antisense, RP_050217_01_C10, Mouse strain C57BL/6J (56 days, male) 1.2
73769323 Antisense, RP_051121_04_B08, Mouse strain C57BL/6J (56 days, male) 1.0

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