MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.1 nTPM
HPA Brain:84.2 nTPM
GTEx:35.1 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:28.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.0
2586 Male, age 75, left hemisphere 140.9
2019 Male, age 18, unknown 109.7
2828 Female, age 72, unknown 107.0
1827 Male, age 72, unknown 83.6
2666 Male, age 74, left hemisphere 75.7
2219 Male, age 76, both hemispheres 55.5
2411 Female, age 72, unknown 50.4
1833 Male, age 53, unknown 48.5
1830 Male, age 51, unknown 45.7
1870 Female, age 42, unknown 43.0
Dorsal raphe nucleus
nTPM: 58.6
1828 Male, age 53, unknown 72.6
2016 Female, age 72, unknown 69.9
2298 Female, age 72, unknown 59.9
2047 Male, age 72, unknown 58.6
2750 Male, age 76, both hemispheres 31.7
Inferior colliculus
nTPM: 72.7
1848 Female, age 42, unknown 76.0
1890 Male, age 53, unknown 74.1
2097 Female, age 72, unknown 70.3
2849 Male, age 72, unknown 70.3
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 68.0
2502 Female, age 75, unknown 79.2
1795 Male, age 51, unknown 78.7
1947 Male, age 18, unknown 46.2
Periaquaductal grey, dorsal
nTPM: 64.7
2464 Female, age 72, unknown 72.0
1840 Male, age 53, unknown 71.5
1831 Male, age 72, unknown 65.0
2850 Male, age 76, both hemispheres 50.1
Periaquaductal grey, lateral
nTPM: 55.6
2140 Male, age 76, both hemispheres 62.3
2053 Male, age 18, unknown 59.2
2272 Male, age 74, both hemispheres 45.2
Pretectal area
nTPM: 84.2
1944 Female, age 72, unknown 131.7
1816 Male, age 51, unknown 128.8
2007 Male, age 72, unknown 122.3
1817 Female, age 42, unknown 108.5
1815 Male, age 53, unknown 90.0
2667 Female, age 75, unknown 67.3
2316 Male, age 76, right hemisphere 67.0
2273 Male, age 74, both hemispheres 57.1
2407 Male, age 75, both hemispheres 56.2
2825 Male, age 18, unknown 50.0
2224 Female, age 72, unknown 47.1
Red nucleus
nTPM: 69.2
2785 Male, age 18, unknown 108.3
2503 Female, age 72, unknown 84.1
2588 Male, age 74, left hemisphere 80.8
2823 Male, age 76, right hemisphere 73.7
1954 Female, age 42, unknown 69.1
2769 Male, age 72, unknown 67.9
2227 Male, age 72, unknown 65.0
1865 Male, age 51, unknown 62.3
1821 Female, age 72, unknown 57.1
2725 Female, age 75, unknown 55.4
1904 Male, age 53, unknown 54.7
2584 Male, age 75, left hemisphere 52.0
Substantia nigra
nTPM: 60.7
1889 Female, age 72, unknown 85.2
2583 Male, age 75, right hemisphere 81.1
2665 Male, age 74, both hemispheres 71.8
2590 Female, age 75, unknown 69.7
1916 Female, age 42, unknown 61.4
1941 Male, age 53, unknown 58.4
1851 Male, age 51, unknown 54.3
2699 Male, age 18, unknown 46.1
2409 Female, age 72, unknown 44.4
2241 Male, age 72, unknown 34.9
Superior colliculus
nTPM: 83.1
2087 Female, age 72, unknown 115.9
2664 Male, age 75, both hemispheres 109.5
2261 Male, age 18, unknown 86.0
1796 Male, age 53, unknown 84.3
1895 Male, age 76, right hemisphere 81.7
2668 Female, age 75, unknown 81.5
1995 Male, age 72, unknown 74.3
2587 Male, age 74, left hemisphere 74.1
1839 Male, age 51, unknown 67.8
1913 Female, age 42, unknown 55.9
Ventral tegmental area
nTPM: 46.1
2410 Female, age 72, unknown 60.8
1915 Female, age 42, unknown 51.5
1942 Male, age 51, unknown 49.6
2021 Male, age 53, unknown 46.3
2218 Male, age 76, both hemispheres 36.9
2223 Female, age 72, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.1
Samples: 139

Max nTPM: 92.2
Min nTPM: 4.4
Std nTPM: 16.7
Median nTPM: 34.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 92.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 74.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 73.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 71.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 69.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 63.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 59.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 58.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 20.6
Sample C Male 18.9
Sample D Male 15.2
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 27.0
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 20.0
Sample C Male 27.0
Sample D Male 17.1
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 27.4
Min nTPM: 17.6
Sample B Female 22.6
Sample C Male 27.4
Sample D Male 17.6
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 49.6
Min nTPM: 16.9
Sample A Female 23.5
Sample B Female 49.6
Sample C Male 31.0
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.9
Sample A Male 30.6
Sample B Male 24.9
Sample C Female 27.8
Sample D Female 28.9

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