HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:86.3 nTPM
HPA Brain:54.8 nTPM
GTEx:86.3 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:115.7 nTPM
Mouse:125.8 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052923Antibody HPA055009
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Hippocampus
nTPM: 49.8
2529 Female, age 94, left hemisphere 62.0
1898 Male, age 80, left hemisphere 55.7
2621 Female, age 67, right hemisphere 52.7
1911 Female, age 85, right hemisphere 51.5
2148 Female, age 91, left hemisphere 43.7
1855 Male, age 76, left hemisphere 33.5
Dentate gyrus
nTPM: 41.1
2530 Female, age 94, left hemisphere 56.6
2528 Male, age 74, both hemispheres 46.8
2010 Male, age 76, both hemispheres 41.7
2531 Female, age 67, both hemispheres 37.2
1927 Female, age 91, both hemispheres 35.5
2246 Female, age 85, both hemispheres 28.7
Entorhinal gyrus
nTPM: 51.5
2117 Female, age 91, right hemisphere 79.2
2686 Male, age 75, right hemisphere 61.6
1938 Female, age 85, left hemisphere 53.9
2764 Male, age 80, right hemisphere 45.2
1787 Male, age 76, left hemisphere 38.8
2613 Female, age 94, left hemisphere 30.1
Hippocampus, CA1
nTPM: 39.6
2527 Male, age 74, both hemispheres 51.9
2749 Male, age 80, left hemisphere 47.4
1873 Female, age 85, both hemispheres 43.4
2082 Female, age 91, right hemisphere 34.5
2045 Male, age 76, both hemispheres 20.8
Hippocampus, CA2
nTPM: 43.7
1963 Male, age 80, left hemisphere 63.2
1892 Male, age 76, both hemispheres 45.8
2437 Female, age 94, left hemisphere 43.1
1940 Female, age 85, left hemisphere 36.9
2249 Male, age 74, both hemispheres 36.9
2113 Female, age 91, right hemisphere 36.5
Hippocampus, CA3
nTPM: 41.0
1891 Female, age 85, both hemispheres 50.2
1867 Male, age 76, both hemispheres 49.4
2137 Male, age 80, left hemisphere 45.4
2436 Male, age 74, both hemispheres 35.5
2861 Female, age 67, both hemispheres 34.2
2620 Female, age 94, left hemisphere 31.2
Parahippocampal cortex
nTPM: 41.9
2692 Male, age 74, both hemispheres 63.6
1850 Male, age 80, both hemispheres 56.1
1990 Female, age 91, right hemisphere 47.6
2693 Female, age 94, both hemispheres 39.3
2018 Male, age 76, both hemispheres 38.0
2245 Female, age 91, both hemispheres 37.6
2622 Female, age 67, right hemisphere 36.0
1933 Female, age 85, both hemispheres 35.7
2532 Female, age 72, left hemisphere 35.3
2250 Female, age 67, right hemisphere 30.1
Perirhinal gyrus
nTPM: 38.3
1847 Female, age 91, left hemisphere 50.4
1841 Female, age 85, right hemisphere 46.3
1794 Male, age 80, right hemisphere 43.6
2521 Female, age 94, right hemisphere 30.1
2848 Male, age 76, right hemisphere 21.2
Subiculum
nTPM: 54.8
2619 Male, age 74, both hemispheres 64.4
1901 Male, age 80, both hemispheres 63.3
2042 Male, age 76, both hemispheres 53.2
1977 Female, age 85, both hemispheres 50.9
2729 Female, age 91, right hemisphere 50.4
2438 Female, age 94, left hemisphere 46.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 86.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 86.3
Samples: 197

Max nTPM: 194.7
Min nTPM: 24.5
Std nTPM: 31.8
Median nTPM: 82.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 194.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 172.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 172.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 169.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 158.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 156.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 154.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 151.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 150.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 147.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 147.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.3
FF:10153-102I9 76 years, female 94.7
FF:10169-103B7 60 years, female 77.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 115.7
Pig sample Sample description nTPM
Subiculum
nTPM: 100.0
Samples: 4

Max nTPM: 123.7
Min nTPM: 82.2
Sample A Female 123.7
Sample B Female 97.8
Sample C Male 96.2
Sample D Male 82.2
Dorsal hippocampus
nTPM: 115.7
Samples: 4

Max nTPM: 142.4
Min nTPM: 76.5
Sample A Female 142.4
Sample B Female 106.7
Sample C Male 137.0
Sample D Male 76.5
Entorhinal cortex
nTPM: 113.6
Samples: 4

Max nTPM: 127.6
Min nTPM: 99.5
Sample A Female 108.5
Sample B Female 118.7
Sample C Male 127.6
Sample D Male 99.5
Ventral hippocampus
nTPM: 111.2
Samples: 4

Max nTPM: 138.7
Min nTPM: 85.2
Sample A Female 96.3
Sample B Female 85.2
Sample C Male 138.7
Sample D Male 124.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 125.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 125.7
Samples: 4

Max nTPM: 138.0
Min nTPM: 118.5
Sample A Male 138.0
Sample B Male 123.0
Sample C Female 123.1
Sample D Female 118.5
Hippocampal formation
nTPM: 125.9
Samples: 4

Max nTPM: 140.4
Min nTPM: 115.8
Sample A Male 120.1
Sample B Male 127.1
Sample C Female 140.4
Sample D Female 115.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
1527 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 6.2
1526 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 3.8

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