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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
109.5
nTPM
HPA Brain:
100.4
nTPM
GTEx:
109.5
nTPM
FANTOM5:
135.1
Scaled Tags Per Million
Pig:
164.0
nTPM
Mouse:
160.9
nTPM
Allen mouse:
5.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
100.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 90.8
2586
Male, age 75, left hemisphere
119.2
2411
Female, age 72, unknown
100.9
2666
Male, age 74, left hemisphere
97.3
2828
Female, age 72, unknown
96.7
1833
Male, age 53, unknown
96.6
2019
Male, age 18, unknown
89.4
1870
Female, age 42, unknown
86.6
1830
Male, age 51, unknown
82.8
1827
Male, age 72, unknown
78.3
2219
Male, age 76, both hemispheres
60.0
Dorsal raphe nucleus nTPM: 80.5
2016
Female, age 72, unknown
89.3
2750
Male, age 76, both hemispheres
86.2
2047
Male, age 72, unknown
86.0
1828
Male, age 53, unknown
79.3
2298
Female, age 72, unknown
61.5
Inferior colliculus nTPM: 80.9
1848
Female, age 42, unknown
89.1
2849
Male, age 72, unknown
82.6
1890
Male, age 53, unknown
81.3
2097
Female, age 72, unknown
70.5
Median raphe nucleus nTPM: 65.9
2220
Male, age 76, midline
65.9
Periaquaductal grey, anterior nTPM: 72.1
2502
Female, age 75, unknown
83.3
1947
Male, age 18, unknown
76.8
1795
Male, age 51, unknown
56.3
Periaquaductal grey, dorsal nTPM: 68.8
1840
Male, age 53, unknown
75.8
1831
Male, age 72, unknown
73.5
2464
Female, age 72, unknown
67.6
2850
Male, age 76, both hemispheres
58.4
Periaquaductal grey, lateral nTPM: 59.8
2053
Male, age 18, unknown
73.5
2140
Male, age 76, both hemispheres
55.6
2272
Male, age 74, both hemispheres
50.5
Pretectal area nTPM: 78.2
1817
Female, age 42, unknown
103.5
1815
Male, age 53, unknown
98.9
1944
Female, age 72, unknown
97.0
2007
Male, age 72, unknown
88.8
1816
Male, age 51, unknown
82.7
2316
Male, age 76, right hemisphere
76.1
2825
Male, age 18, unknown
71.1
2407
Male, age 75, both hemispheres
67.0
2667
Female, age 75, unknown
63.5
2273
Male, age 74, both hemispheres
55.9
2224
Female, age 72, unknown
55.4
Red nucleus nTPM: 100.4
1821
Female, age 72, unknown
132.3
2588
Male, age 74, left hemisphere
114.2
2503
Female, age 72, unknown
108.3
1865
Male, age 51, unknown
107.4
2584
Male, age 75, left hemisphere
100.9
2769
Male, age 72, unknown
99.9
1954
Female, age 42, unknown
96.7
1904
Male, age 53, unknown
95.7
2227
Male, age 72, unknown
92.4
2785
Male, age 18, unknown
89.6
2725
Female, age 75, unknown
84.5
2823
Male, age 76, right hemisphere
83.2
Substantia nigra nTPM: 88.7
1889
Female, age 72, unknown
100.6
2665
Male, age 74, both hemispheres
92.9
2583
Male, age 75, right hemisphere
91.6
2590
Female, age 75, unknown
91.2
1851
Male, age 51, unknown
90.6
1916
Female, age 42, unknown
89.3
2699
Male, age 18, unknown
88.5
2409
Female, age 72, unknown
83.7
2241
Male, age 72, unknown
82.8
1941
Male, age 53, unknown
76.2
Superior colliculus nTPM: 85.7
2668
Female, age 75, unknown
99.6
1839
Male, age 51, unknown
96.5
1895
Male, age 76, right hemisphere
95.3
2664
Male, age 75, both hemispheres
94.7
1913
Female, age 42, unknown
92.7
2587
Male, age 74, left hemisphere
89.8
1995
Male, age 72, unknown
80.8
2261
Male, age 18, unknown
75.6
1796
Male, age 53, unknown
72.2
2087
Female, age 72, unknown
59.7
Ventral tegmental area nTPM: 80.8
2410
Female, age 72, unknown
118.2
1915
Female, age 42, unknown
80.5
1942
Male, age 51, unknown
79.5
2021
Male, age 53, unknown
72.4
2223
Female, age 72, unknown
69.6
2218
Male, age 76, both hemispheres
64.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
109.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 109.5
Samples: 139
Max nTPM: 198.3
Min nTPM: 48.5
Std nTPM: 32.6
Median nTPM: 103.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
198.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
194.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
188.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
187.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
186.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
181.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
175.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
171.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
169.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
169.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
168.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
161.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
161.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
158.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
157.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
155.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
154.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
148.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
147.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
146.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
146.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
142.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
140.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
137.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
137.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
136.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
136.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
135.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
134.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
133.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
132.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
132.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
131.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
130.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
127.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
125.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
125.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
125.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
125.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
125.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
124.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
123.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
122.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
122.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
122.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
121.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
119.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
119.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
119.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
117.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
116.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
114.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
114.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
112.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
111.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
111.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
110.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
110.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
109.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
109.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
108.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
107.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
105.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
105.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
104.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
104.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
104.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
104.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
103.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
103.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
103.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
102.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
102.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
101.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
101.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
101.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
100.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
100.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
100.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
99.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
99.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
99.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
98.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
97.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
97.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
97.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
96.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
95.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
94.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
93.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
93.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
93.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
92.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
92.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
91.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
91.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
90.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
90.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
90.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
88.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
87.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
86.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
85.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
85.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
84.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
84.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
83.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
82.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
82.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
81.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
80.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
80.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
80.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
79.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
78.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
78.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
78.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
76.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
75.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
74.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
73.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
72.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
72.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
72.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
72.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
69.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
68.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
68.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
67.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
67.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
67.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
67.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
61.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
57.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
56.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
55.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
53.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
48.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
160.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 160.9
Samples: 4
Max nTPM: 166.2
Min nTPM: 154.6
Sample A
Male
154.6
Sample B
Male
157.5
Sample C
Female
166.2
Sample D
Female
165.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.