HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:166.0 nTPM
HPA Brain:84.1 nTPM
GTEx:166.0 nTPM
FANTOM5:202.8 Scaled Tags Per Million
Pig:236.9 nTPM
Mouse:508.7 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Hippocampus
nTPM: 72.8
1898 Male, age 80, left hemisphere 90.6
1855 Male, age 76, left hemisphere 78.8
2529 Female, age 94, left hemisphere 78.5
2148 Female, age 91, left hemisphere 64.2
2621 Female, age 67, right hemisphere 63.6
1911 Female, age 85, right hemisphere 60.9
Dentate gyrus
nTPM: 68.3
2010 Male, age 76, both hemispheres 81.3
1927 Female, age 91, both hemispheres 78.1
2530 Female, age 94, left hemisphere 71.9
2246 Female, age 85, both hemispheres 69.1
2528 Male, age 74, both hemispheres 59.1
2531 Female, age 67, both hemispheres 50.4
Entorhinal gyrus
nTPM: 64.8
1938 Female, age 85, left hemisphere 72.7
1787 Male, age 76, left hemisphere 71.7
2764 Male, age 80, right hemisphere 70.8
2117 Female, age 91, right hemisphere 69.8
2686 Male, age 75, right hemisphere 57.9
2613 Female, age 94, left hemisphere 45.7
Hippocampus, CA1
nTPM: 84.1
2749 Male, age 80, left hemisphere 126.7
1873 Female, age 85, both hemispheres 81.0
2527 Male, age 74, both hemispheres 79.4
2045 Male, age 76, both hemispheres 73.1
2082 Female, age 91, right hemisphere 60.4
Hippocampus, CA2
nTPM: 72.8
1892 Male, age 76, both hemispheres 89.4
1963 Male, age 80, left hemisphere 84.7
2249 Male, age 74, both hemispheres 80.1
2437 Female, age 94, left hemisphere 70.3
2113 Female, age 91, right hemisphere 56.6
1940 Female, age 85, left hemisphere 55.8
Hippocampus, CA3
nTPM: 70.8
2137 Male, age 80, left hemisphere 97.0
1867 Male, age 76, both hemispheres 83.3
2436 Male, age 74, both hemispheres 78.9
1891 Female, age 85, both hemispheres 63.3
2620 Female, age 94, left hemisphere 54.0
2861 Female, age 67, both hemispheres 48.0
Parahippocampal cortex
nTPM: 65.5
1850 Male, age 80, both hemispheres 78.4
2250 Female, age 67, right hemisphere 73.2
1990 Female, age 91, right hemisphere 71.9
2018 Male, age 76, both hemispheres 71.2
2245 Female, age 91, both hemispheres 70.0
1933 Female, age 85, both hemispheres 67.3
2532 Female, age 72, left hemisphere 62.2
2692 Male, age 74, both hemispheres 60.6
2622 Female, age 67, right hemisphere 52.5
2693 Female, age 94, both hemispheres 48.2
Perirhinal gyrus
nTPM: 76.2
1847 Female, age 91, left hemisphere 94.4
1794 Male, age 80, right hemisphere 88.8
1841 Female, age 85, right hemisphere 74.5
2521 Female, age 94, right hemisphere 68.3
2848 Male, age 76, right hemisphere 55.2
Subiculum
nTPM: 70.2
2438 Female, age 94, left hemisphere 85.1
1901 Male, age 80, both hemispheres 77.7
1977 Female, age 85, both hemispheres 68.6
2042 Male, age 76, both hemispheres 66.5
2619 Male, age 74, both hemispheres 65.4
2729 Female, age 91, right hemisphere 57.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 166.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 166.0
Samples: 197

Max nTPM: 453.6
Min nTPM: 68.6
Std nTPM: 59.9
Median nTPM: 158.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 453.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 384.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 346.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 330.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 328.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 309.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 308.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 305.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 304.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 295.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 294.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 202.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 202.8
FF:10169-103B7 60 years, female 257.5
FF:10153-102I9 76 years, female 148.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 236.9
Pig sample Sample description nTPM
Subiculum
nTPM: 177.3
Samples: 4

Max nTPM: 247.7
Min nTPM: 140.4
Sample A Female 247.7
Sample B Female 158.2
Sample C Male 140.4
Sample D Male 162.9
Dorsal hippocampus
nTPM: 236.9
Samples: 4

Max nTPM: 329.3
Min nTPM: 170.4
Sample A Female 329.3
Sample B Female 218.9
Sample C Male 229.0
Sample D Male 170.4
Entorhinal cortex
nTPM: 206.0
Samples: 4

Max nTPM: 269.1
Min nTPM: 152.7
Sample A Female 209.8
Sample B Female 269.1
Sample C Male 192.3
Sample D Male 152.7
Ventral hippocampus
nTPM: 212.7
Samples: 4

Max nTPM: 261.8
Min nTPM: 166.5
Sample A Female 261.8
Sample B Female 166.5
Sample C Male 221.4
Sample D Male 200.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 508.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 481.9
Samples: 4

Max nTPM: 494.8
Min nTPM: 465.9
Sample A Male 465.9
Sample B Male 494.8
Sample C Female 476.6
Sample D Female 490.1
Hippocampal formation
nTPM: 508.7
Samples: 4

Max nTPM: 557.9
Min nTPM: 470.4
Sample A Male 557.9
Sample B Male 470.4
Sample C Female 491.7
Sample D Female 514.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
71763957 Antisense, RP_050921_02_H08, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org