MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA Brain:29.9 nTPM
GTEx:36.5 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:46.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.8
1833 Male, age 53, unknown 24.7
1870 Female, age 42, unknown 23.7
2411 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 23.5
2666 Male, age 74, left hemisphere 20.1
1827 Male, age 72, unknown 20.0
2019 Male, age 18, unknown 19.9
1830 Male, age 51, unknown 19.4
2828 Female, age 72, unknown 16.4
2586 Male, age 75, left hemisphere 16.0
Dorsal raphe nucleus
nTPM: 27.0
2298 Female, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 29.9
2047 Male, age 72, unknown 28.3
1828 Male, age 53, unknown 24.3
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 19.8
1890 Male, age 53, unknown 21.8
2097 Female, age 72, unknown 21.4
1848 Female, age 42, unknown 18.6
2849 Male, age 72, unknown 17.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 20.2
1947 Male, age 18, unknown 22.8
1795 Male, age 51, unknown 19.4
2502 Female, age 75, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 19.6
2850 Male, age 76, both hemispheres 21.5
1840 Male, age 53, unknown 21.0
2464 Female, age 72, unknown 19.2
1831 Male, age 72, unknown 16.9
Periaquaductal grey, lateral
nTPM: 18.5
2053 Male, age 18, unknown 19.2
2140 Male, age 76, both hemispheres 18.2
2272 Male, age 74, both hemispheres 18.2
Pretectal area
nTPM: 20.3
1817 Female, age 42, unknown 23.4
1944 Female, age 72, unknown 23.1
1816 Male, age 51, unknown 22.8
2007 Male, age 72, unknown 22.7
1815 Male, age 53, unknown 22.6
2224 Female, age 72, unknown 20.7
2273 Male, age 74, both hemispheres 19.1
2825 Male, age 18, unknown 17.9
2667 Female, age 75, unknown 17.5
2407 Male, age 75, both hemispheres 17.4
2316 Male, age 76, right hemisphere 16.6
Red nucleus
nTPM: 21.6
1821 Female, age 72, unknown 29.0
2725 Female, age 75, unknown 24.6
2503 Female, age 72, unknown 23.8
1865 Male, age 51, unknown 22.3
1904 Male, age 53, unknown 22.3
2227 Male, age 72, unknown 21.3
2584 Male, age 75, left hemisphere 20.4
1954 Female, age 42, unknown 20.2
2785 Male, age 18, unknown 19.7
2823 Male, age 76, right hemisphere 18.7
2769 Male, age 72, unknown 18.5
2588 Male, age 74, left hemisphere 18.1
Substantia nigra
nTPM: 29.3
2241 Male, age 72, unknown 45.8
2409 Female, age 72, unknown 38.8
1916 Female, age 42, unknown 38.5
1941 Male, age 53, unknown 28.3
2699 Male, age 18, unknown 28.0
1851 Male, age 51, unknown 27.8
1889 Female, age 72, unknown 24.8
2590 Female, age 75, unknown 24.1
2665 Male, age 74, both hemispheres 19.1
2583 Male, age 75, right hemisphere 18.1
Superior colliculus
nTPM: 19.1
2668 Female, age 75, unknown 24.2
2087 Female, age 72, unknown 20.8
2587 Male, age 74, left hemisphere 20.6
1839 Male, age 51, unknown 20.4
2261 Male, age 18, unknown 20.4
1913 Female, age 42, unknown 18.9
1895 Male, age 76, right hemisphere 18.7
1796 Male, age 53, unknown 17.2
1995 Male, age 72, unknown 15.0
2664 Male, age 75, both hemispheres 15.0
Ventral tegmental area
nTPM: 26.4
2410 Female, age 72, unknown 37.9
2218 Male, age 76, both hemispheres 29.1
1915 Female, age 42, unknown 28.8
1942 Male, age 51, unknown 22.6
2223 Female, age 72, unknown 21.2
2021 Male, age 53, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.5
Samples: 139

Max nTPM: 67.3
Min nTPM: 14.4
Std nTPM: 9.7
Median nTPM: 35.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 59.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 53.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 53.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 53.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 53.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 52.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 51.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 14.9
Sample A Female 27.0
Sample B Female 18.4
Sample C Male 26.6
Sample D Male 14.9
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 20.5
Sample C Male 17.1
Sample D Male 18.7
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 21.3
Min nTPM: 15.9
Sample B Female 18.8
Sample C Male 21.3
Sample D Male 15.9
Superior colliculi
nTPM: 17.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 16.2
Sample A Female 19.2
Sample B Female 16.2
Sample C Male 18.1
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 49.8
Min nTPM: 44.6
Sample A Male 49.8
Sample B Male 47.8
Sample C Female 44.6
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
638723 Antisense, RP_040831_02_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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