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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.2
nTPM
Monaco:
47.5
nTPM
Schmiedel:
50.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
42.2
HPA sample
nTPM
gdT-cell nTPM: 22.3
Samples: 6
Max nTPM: 24.6
Min nTPM: 17.2
P10809_1007
17.2
P10809_1022
23.5
P10809_1041
24.6
P10809_1060
23.7
P10809_1077
24.6
P10809_1098
20.3
MAIT T-cell nTPM: 32.1
Samples: 6
Max nTPM: 52.9
Min nTPM: 23.3
P10809_1006
23.3
P10809_1024
52.9
P10809_1043
36.0
P10809_1062
24.5
P10809_1083
31.2
P10809_1097
24.8
Memory CD4 T-cell nTPM: 32.9
Samples: 6
Max nTPM: 41.8
Min nTPM: 28.7
P10809_1014
28.7
P10809_1026
33.1
P10809_1045
28.9
P10809_1064
29.3
P10809_1086
35.8
P10809_1113
41.8
Memory CD8 T-cell nTPM: 30.4
Samples: 5
Max nTPM: 36.0
Min nTPM: 24.7
P10809_1012
33.9
P10809_1027
27.2
P10809_1046
36.0
P10809_1065
24.7
P10809_1111
30.0
Naive CD4 T-cell nTPM: 41.4
Samples: 6
Max nTPM: 52.8
Min nTPM: 33.3
P10809_1015
39.2
P10809_1030
52.8
P10809_1049
48.0
P10809_1068
39.0
P10809_1085
33.3
P10809_1112
36.3
Naive CD8 T-cell nTPM: 42.2
Samples: 6
Max nTPM: 56.8
Min nTPM: 24.5
P10809_1016
38.5
P10809_1031
56.8
P10809_1050
39.9
P10809_1069
43.2
P10809_1087
24.5
P10809_1110
50.1
T-reg nTPM: 34.0
Samples: 6
Max nTPM: 48.0
Min nTPM: 28.2
P10809_1018
29.5
P10809_1037
48.0
P10809_1056
35.2
P10809_1075
34.5
P10809_1094
28.2
P10809_1106
28.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
47.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 24.4
Samples: 4
Max nTPM: 35.3
Min nTPM: 18.3
RHH5202_R3573
35.3
RHH5230_R3602
20.1
RHH5259_R3631
24.0
RHH5288_R3660
18.3
Effector memory CD8 T-cell nTPM: 17.7
Samples: 4
Max nTPM: 20.9
Min nTPM: 15.4
RHH5203_R3574
20.9
RHH5231_R3603
18.9
RHH5260_R3632
15.5
RHH5289_R3661
15.4
MAIT T-cell nTPM: 35.4
Samples: 4
Max nTPM: 46.2
Min nTPM: 27.0
RHH5233_R3605
36.9
RHH5205_R3576
27.0
RHH5262_R3634
46.2
RHH5297_R3663
31.4
Memory CD4 T-cell TFH nTPM: 42.9
Samples: 4
Max nTPM: 56.9
Min nTPM: 32.7
RHH5300_R3666
47.7
RHH5236_R3608
34.4
RHH5265_R3637
32.7
RHH5208_R3579
56.9
Memory CD4 T-cell Th1 nTPM: 28.8
Samples: 4
Max nTPM: 45.2
Min nTPM: 14.3
RHH5210_R3581
45.2
RHH5302_R3668
33.4
RHH5238_R3610
14.3
RHH5267_R3639
22.2
Memory CD4 T-cell Th1/Th17 nTPM: 26.3
Samples: 4
Max nTPM: 55.2
Min nTPM: 3.5
RHH5303_R3669
27.4
RHH5211_R3582
55.2
RHH5239_R3611
3.5
RHH5268_R3640
19.1
Memory CD4 T-cell Th17 nTPM: 23.8
Samples: 4
Max nTPM: 33.6
Min nTPM: 17.5
RHH5304_R3670
17.5
RHH5212_R3583
33.6
RHH5240_R3612
22.5
RHH5269_R3641
21.5
Memory CD4 T-cell Th2 nTPM: 28.6
Samples: 4
Max nTPM: 42.9
Min nTPM: 12.0
RHH5305_R3671
42.9
RHH5213_R3584
22.0
RHH5241_R3613
37.4
RHH5270_R3642
12.0
Naive CD4 T-cell nTPM: 36.1
Samples: 4
Max nTPM: 47.4
Min nTPM: 24.5
RHH5306_R3672
38.3
RHH5214_R3585
47.4
RHH5242_R3614
24.5
RHH5271_R3643
34.2
Naive CD8 T-cell nTPM: 47.5
Samples: 4
Max nTPM: 70.9
Min nTPM: 37.5
RHH5201_R3572
70.9
RHH5229_R3601
38.1
RHH5258_R3630
43.5
RHH5287_R3659
37.5
Non-Vd2 gdTCR nTPM: 25.3
Samples: 4
Max nTPM: 33.8
Min nTPM: 15.6
RHH5235_R3607
15.6
RHH5264_R3636
23.6
RHH5207_R3578
28.3
RHH5299_R3665
33.8
T-reg nTPM: 28.5
Samples: 4
Max nTPM: 39.3
Min nTPM: 10.4
RHH5301_R3667
32.0
RHH5237_R3609
39.3
RHH5266_R3638
10.4
RHH5209_R3580
32.1
Terminal effector memory CD4 T-cell nTPM: 14.7
Samples: 2
Max nTPM: 14.7
Min nTPM: 14.6
RHH5243_R3615
14.6
RHH5272_R3644
14.7
Terminal effector memory CD8 T-cell nTPM: 23.7
Samples: 4
Max nTPM: 34.3
Min nTPM: 13.9
RHH5232_R3604
13.9
RHH5204_R3575
31.3
RHH5261_R3633
15.3
RHH5296_R3662
34.3
Vd2 gdTCR nTPM: 25.3
Samples: 4
Max nTPM: 40.4
Min nTPM: 14.1
RHH5234_R3606
18.5
RHH5206_R3577
28.2
RHH5263_R3635
14.1
RHH5298_R3664
40.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
