MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:218.0 nTPM
HPA Brain:270.0 nTPM
GTEx:218.0 nTPM
FANTOM5:474.2 Scaled Tags Per Million
Pig:197.4 nTPM
Mouse:75.9 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 270.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.8
2219 Male, age 76, both hemispheres 282.4
2586 Male, age 75, left hemisphere 246.2
2411 Female, age 72, unknown 237.8
1830 Male, age 51, unknown 237.6
1833 Male, age 53, unknown 222.7
2019 Male, age 18, unknown 212.9
1870 Female, age 42, unknown 211.3
2828 Female, age 72, unknown 198.7
1827 Male, age 72, unknown 161.6
2666 Male, age 74, left hemisphere 157.2
Dorsal raphe nucleus
nTPM: 163.9
2750 Male, age 76, both hemispheres 237.4
2016 Female, age 72, unknown 181.8
1828 Male, age 53, unknown 166.4
2047 Male, age 72, unknown 126.3
2298 Female, age 72, unknown 107.6
Inferior colliculus
nTPM: 158.7
1890 Male, age 53, unknown 185.9
1848 Female, age 42, unknown 151.6
2849 Male, age 72, unknown 150.5
2097 Female, age 72, unknown 146.9
Median raphe nucleus
nTPM: 102.0
2220 Male, age 76, midline 102.0
Periaquaductal grey, anterior
nTPM: 150.0
2502 Female, age 75, unknown 180.3
1947 Male, age 18, unknown 139.3
1795 Male, age 51, unknown 130.4
Periaquaductal grey, dorsal
nTPM: 115.5
2464 Female, age 72, unknown 169.9
1831 Male, age 72, unknown 116.0
1840 Male, age 53, unknown 105.0
2850 Male, age 76, both hemispheres 70.9
Periaquaductal grey, lateral
nTPM: 121.7
2272 Male, age 74, both hemispheres 139.3
2053 Male, age 18, unknown 139.0
2140 Male, age 76, both hemispheres 86.9
Pretectal area
nTPM: 154.4
2316 Male, age 76, right hemisphere 227.6
1815 Male, age 53, unknown 201.0
1817 Female, age 42, unknown 180.1
2007 Male, age 72, unknown 178.9
2407 Male, age 75, both hemispheres 169.4
2667 Female, age 75, unknown 143.6
2825 Male, age 18, unknown 143.6
2224 Female, age 72, unknown 124.0
2273 Male, age 74, both hemispheres 114.4
1816 Male, age 51, unknown 111.8
1944 Female, age 72, unknown 103.8
Red nucleus
nTPM: 270.0
2769 Male, age 72, unknown 318.2
2503 Female, age 72, unknown 316.6
2227 Male, age 72, unknown 316.4
1904 Male, age 53, unknown 311.8
1865 Male, age 51, unknown 297.3
2823 Male, age 76, right hemisphere 290.8
2588 Male, age 74, left hemisphere 269.8
1821 Female, age 72, unknown 269.7
2785 Male, age 18, unknown 258.3
1954 Female, age 42, unknown 241.1
2584 Male, age 75, left hemisphere 191.3
2725 Female, age 75, unknown 159.0
Substantia nigra
nTPM: 169.6
2699 Male, age 18, unknown 235.3
1851 Male, age 51, unknown 201.9
2583 Male, age 75, right hemisphere 192.0
2665 Male, age 74, both hemispheres 187.1
2409 Female, age 72, unknown 179.6
1889 Female, age 72, unknown 167.8
2590 Female, age 75, unknown 159.9
1916 Female, age 42, unknown 138.1
1941 Male, age 53, unknown 117.4
2241 Male, age 72, unknown 116.5
Superior colliculus
nTPM: 193.3
2668 Female, age 75, unknown 276.3
1995 Male, age 72, unknown 253.8
1895 Male, age 76, right hemisphere 235.3
1913 Female, age 42, unknown 219.1
1839 Male, age 51, unknown 192.2
2664 Male, age 75, both hemispheres 184.1
2587 Male, age 74, left hemisphere 180.1
1796 Male, age 53, unknown 147.3
2261 Male, age 18, unknown 128.5
2087 Female, age 72, unknown 116.0
Ventral tegmental area
nTPM: 167.0
2410 Female, age 72, unknown 203.1
2223 Female, age 72, unknown 192.8
1915 Female, age 42, unknown 164.4
1942 Male, age 51, unknown 160.5
2021 Male, age 53, unknown 151.1
2218 Male, age 76, both hemispheres 130.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 218.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 218.0
Samples: 139

Max nTPM: 483.4
Min nTPM: 41.8
Std nTPM: 85.9
Median nTPM: 202.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 483.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 427.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 423.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 408.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 401.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 385.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 380.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 374.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 359.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 349.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 348.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 474.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 474.2
FF:10158-103A5 76 years, female 474.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 197.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 197.4
Samples: 4

Max nTPM: 264.1
Min nTPM: 141.4
Sample A Female 232.2
Sample B Female 141.4
Sample C Male 152.0
Sample D Male 264.1
Midbrain
nTPM: 193.5
Samples: 4

Max nTPM: 271.4
Min nTPM: 141.6
Sample A Female 271.4
Sample B Female 213.2
Sample C Male 141.6
Sample D Male 147.8
Periaqueductal gray
nTPM: 146.6
Samples: 3

Max nTPM: 184.5
Min nTPM: 123.8
Sample B Female 184.5
Sample C Male 123.8
Sample D Male 131.4
Superior colliculi
nTPM: 166.8
Samples: 4

Max nTPM: 217.7
Min nTPM: 93.2
Sample A Female 217.7
Sample B Female 93.2
Sample C Male 170.2
Sample D Male 185.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 85.3
Min nTPM: 65.8
Sample A Male 85.3
Sample B Male 65.8
Sample C Female 69.3
Sample D Female 83.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70437828 Antisense, RP_050614_03_A03, Mouse strain C57BL/6J (56 days, male) 4.3

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