HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:57.7 nTPM
HPA Brain:49.4 nTPM
GTEx:57.7 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:12.3 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040232
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.4
Sample id Sample description nTPM
Hippocampus
nTPM: 43.1
2529 Female, age 94, left hemisphere 52.3
2621 Female, age 67, right hemisphere 52.3
2148 Female, age 91, left hemisphere 45.6
1911 Female, age 85, right hemisphere 42.6
1898 Male, age 80, left hemisphere 33.8
1855 Male, age 76, left hemisphere 31.9
Dentate gyrus
nTPM: 40.7
2530 Female, age 94, left hemisphere 62.2
2531 Female, age 67, both hemispheres 49.1
2010 Male, age 76, both hemispheres 35.6
2246 Female, age 85, both hemispheres 34.7
2528 Male, age 74, both hemispheres 32.4
1927 Female, age 91, both hemispheres 30.3
Entorhinal gyrus
nTPM: 49.4
2686 Male, age 75, right hemisphere 66.5
2117 Female, age 91, right hemisphere 61.1
2764 Male, age 80, right hemisphere 49.3
2613 Female, age 94, left hemisphere 45.4
1938 Female, age 85, left hemisphere 39.1
1787 Male, age 76, left hemisphere 34.9
Hippocampus, CA1
nTPM: 32.1
2082 Female, age 91, right hemisphere 42.0
1873 Female, age 85, both hemispheres 37.0
2527 Male, age 74, both hemispheres 33.1
2749 Male, age 80, left hemisphere 26.6
2045 Male, age 76, both hemispheres 21.7
Hippocampus, CA2
nTPM: 40.1
1963 Male, age 80, left hemisphere 54.7
2437 Female, age 94, left hemisphere 44.2
2113 Female, age 91, right hemisphere 43.0
1940 Female, age 85, left hemisphere 39.9
2249 Male, age 74, both hemispheres 32.9
1892 Male, age 76, both hemispheres 26.1
Hippocampus, CA3
nTPM: 34.4
2861 Female, age 67, both hemispheres 47.8
1891 Female, age 85, both hemispheres 46.4
1867 Male, age 76, both hemispheres 32.5
2620 Female, age 94, left hemisphere 29.6
2137 Male, age 80, left hemisphere 26.7
2436 Male, age 74, both hemispheres 23.6
Parahippocampal cortex
nTPM: 39.2
2692 Male, age 74, both hemispheres 50.6
2532 Female, age 72, left hemisphere 47.9
2622 Female, age 67, right hemisphere 45.8
1990 Female, age 91, right hemisphere 44.1
2245 Female, age 91, both hemispheres 43.1
1850 Male, age 80, both hemispheres 35.7
2018 Male, age 76, both hemispheres 34.6
1933 Female, age 85, both hemispheres 32.5
2250 Female, age 67, right hemisphere 28.7
2693 Female, age 94, both hemispheres 28.7
Perirhinal gyrus
nTPM: 29.2
1847 Female, age 91, left hemisphere 32.5
1794 Male, age 80, right hemisphere 30.7
2848 Male, age 76, right hemisphere 29.7
1841 Female, age 85, right hemisphere 28.7
2521 Female, age 94, right hemisphere 24.5
Subiculum
nTPM: 47.1
2438 Female, age 94, left hemisphere 55.7
2042 Male, age 76, both hemispheres 54.6
1977 Female, age 85, both hemispheres 49.7
1901 Male, age 80, both hemispheres 45.6
2619 Male, age 74, both hemispheres 40.4
2729 Female, age 91, right hemisphere 36.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 57.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.7
Samples: 197

Max nTPM: 185.9
Min nTPM: 8.5
Std nTPM: 33.4
Median nTPM: 48.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 185.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 184.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 178.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 162.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 146.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 143.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 138.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 131.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 130.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 130.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 126.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.2
FF:10153-102I9 76 years, female 29.0
FF:10169-103B7 60 years, female 11.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Subiculum
nTPM: 18.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 14.8
Sample A Female 24.4
Sample B Female 19.4
Sample C Male 15.5
Sample D Male 14.8
Dorsal hippocampus
nTPM: 21.3
Samples: 4

Max nTPM: 27.7
Min nTPM: 12.2
Sample A Female 27.7
Sample B Female 18.5
Sample C Male 26.9
Sample D Male 12.2
Entorhinal cortex
nTPM: 17.3
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 19.1
Sample C Male 20.2
Sample D Male 15.6
Ventral hippocampus
nTPM: 18.9
Samples: 4

Max nTPM: 22.8
Min nTPM: 15.2
Sample A Female 17.4
Sample B Female 15.2
Sample C Male 22.8
Sample D Male 20.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.1
Sample A Male 11.1
Sample B Male 10.0
Sample C Female 10.8
Sample D Female 9.1
Hippocampal formation
nTPM: 12.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 11.0
Sample C Female 14.3
Sample D Female 13.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69289399 Antisense, RP_050407_03_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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