MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.9 nTPM
HPA Brain:75.9 nTPM
GTEx:66.9 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:13.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.2
2586 Male, age 75, left hemisphere 92.1
2666 Male, age 74, left hemisphere 89.9
2828 Female, age 72, unknown 72.8
1833 Male, age 53, unknown 68.8
1830 Male, age 51, unknown 66.6
2411 Female, age 72, unknown 59.7
1870 Female, age 42, unknown 58.1
1827 Male, age 72, unknown 55.5
2219 Male, age 76, both hemispheres 55.2
2019 Male, age 18, unknown 52.9
Dorsal raphe nucleus
nTPM: 48.5
2016 Female, age 72, unknown 58.8
2750 Male, age 76, both hemispheres 58.6
1828 Male, age 53, unknown 49.7
2047 Male, age 72, unknown 39.9
2298 Female, age 72, unknown 35.8
Inferior colliculus
nTPM: 47.4
2849 Male, age 72, unknown 60.6
1848 Female, age 42, unknown 48.3
1890 Male, age 53, unknown 44.4
2097 Female, age 72, unknown 36.0
Median raphe nucleus
nTPM: 40.1
2220 Male, age 76, midline 40.1
Periaquaductal grey, anterior
nTPM: 52.3
2502 Female, age 75, unknown 60.7
1795 Male, age 51, unknown 48.1
1947 Male, age 18, unknown 48.1
Periaquaductal grey, dorsal
nTPM: 46.6
2464 Female, age 72, unknown 53.3
1831 Male, age 72, unknown 45.4
1840 Male, age 53, unknown 44.4
2850 Male, age 76, both hemispheres 43.4
Periaquaductal grey, lateral
nTPM: 45.6
2053 Male, age 18, unknown 50.0
2140 Male, age 76, both hemispheres 46.6
2272 Male, age 74, both hemispheres 40.4
Pretectal area
nTPM: 48.6
1815 Male, age 53, unknown 65.9
2825 Male, age 18, unknown 57.4
2316 Male, age 76, right hemisphere 55.9
2407 Male, age 75, both hemispheres 53.9
1817 Female, age 42, unknown 53.7
2007 Male, age 72, unknown 49.6
1816 Male, age 51, unknown 45.8
2667 Female, age 75, unknown 40.1
2224 Female, age 72, unknown 39.2
1944 Female, age 72, unknown 39.0
2273 Male, age 74, both hemispheres 34.2
Red nucleus
nTPM: 75.9
2588 Male, age 74, left hemisphere 101.3
2503 Female, age 72, unknown 92.9
1904 Male, age 53, unknown 79.1
2769 Male, age 72, unknown 77.9
1865 Male, age 51, unknown 77.2
2227 Male, age 72, unknown 75.8
2584 Male, age 75, left hemisphere 72.9
1821 Female, age 72, unknown 71.1
2785 Male, age 18, unknown 69.6
2725 Female, age 75, unknown 68.6
2823 Male, age 76, right hemisphere 65.1
1954 Female, age 42, unknown 59.7
Substantia nigra
nTPM: 52.4
2665 Male, age 74, both hemispheres 67.2
2699 Male, age 18, unknown 62.4
2590 Female, age 75, unknown 56.5
2583 Male, age 75, right hemisphere 55.6
2409 Female, age 72, unknown 54.8
1851 Male, age 51, unknown 54.2
1889 Female, age 72, unknown 51.5
1941 Male, age 53, unknown 41.0
2241 Male, age 72, unknown 41.0
1916 Female, age 42, unknown 39.4
Superior colliculus
nTPM: 60.3
1995 Male, age 72, unknown 76.9
2587 Male, age 74, left hemisphere 67.8
1913 Female, age 42, unknown 65.4
1839 Male, age 51, unknown 63.3
2664 Male, age 75, both hemispheres 62.8
2668 Female, age 75, unknown 60.8
1895 Male, age 76, right hemisphere 54.7
2261 Male, age 18, unknown 54.3
1796 Male, age 53, unknown 53.5
2087 Female, age 72, unknown 43.0
Ventral tegmental area
nTPM: 49.0
2410 Female, age 72, unknown 62.9
2223 Female, age 72, unknown 47.4
1942 Male, age 51, unknown 47.3
2021 Male, age 53, unknown 47.3
1915 Female, age 42, unknown 46.8
2218 Male, age 76, both hemispheres 42.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 194.3
Min nTPM: 17.6
Std nTPM: 36.0
Median nTPM: 58.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 194.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 185.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 176.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 153.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 145.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 145.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 144.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 140.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 139.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 134.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 131.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.5
Sample A Female 27.2
Sample B Female 23.2
Sample C Male 22.5
Sample D Male 30.1
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 30.4
Min nTPM: 15.6
Sample A Female 29.1
Sample B Female 30.4
Sample C Male 15.6
Sample D Male 20.6
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 26.9
Min nTPM: 22.0
Sample B Female 26.9
Sample C Male 23.3
Sample D Male 22.0
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 25.8
Min nTPM: 17.4
Sample A Female 25.8
Sample B Female 17.4
Sample C Male 20.5
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.9
Sample A Male 14.1
Sample B Male 11.9
Sample C Female 13.9
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69289399 Antisense, RP_050407_03_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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